|
|
VENTX_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
VENTX |
|
1 |
17344 |
983 |
1934 |
3662 |
|
TF group |
homeodomain |
|
2 |
9981 |
13942 |
6941 |
5912 |
|
Polypeptide used |
DBD |
|
3 |
562 |
23923 |
0 |
3964 |
|
Ligand sequence |
TGAAGT30NGAA |
|
4 |
7795 |
5650 |
16128 |
626 |
|
Batch of SELEX experiment |
AI |
|
5 |
23923 |
203 |
0 |
74 |
|
Seed sequence |
NMCRATTAR |
|
6 |
0 |
0 |
0 |
23923 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
0 |
0 |
23923 |
|
SELEX cycle |
4 |
|
8 |
23923 |
0 |
0 |
0 |
|
Number of repeats |
monomeric |
|
9 |
8820 |
706 |
15103 |
2189 |
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
VENTX_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
VENTX |
|
1 |
3428 |
12885 |
4459 |
2298 |
|
TF group |
homeodomain |
|
2 |
2522 |
9522 |
9847 |
1106 |
|
Polypeptide used |
DBD |
|
3 |
970 |
11154 |
724 |
7494 |
|
Ligand sequence |
TGAAGT30NGAA |
|
4 |
98 |
16 |
36 |
17516 |
|
Batch of SELEX experiment |
AI |
|
5 |
15866 |
43 |
112 |
16 |
|
Seed sequence |
SSYTAATCGRWAANCGATTAR |
|
6 |
15709 |
102 |
105 |
17 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
17 |
45 |
81 |
17439 |
|
SELEX cycle |
4 |
|
8 |
169 |
14712 |
10899 |
3380 |
|
Number of repeats |
dimeric |
|
9 |
856 |
946 |
20864 |
393 |
|
Comment |
|
|
10 |
6029 |
1402 |
12994 |
452 |
|
Representative matrix |
yes |
|
11 |
11155 |
40 |
204 |
4331 |
|
|
|
|
12 |
15722 |
47 |
55 |
1927 |
|
|
|
|
13 |
15186 |
302 |
50 |
1736 |
|
|
|
|
14 |
10147 |
3924 |
2610 |
306 |
|
|
|
|
15 |
118 |
20982 |
69 |
62 |
|
|
|
|
16 |
1522 |
1376 |
20214 |
26 |
|
|
|
|
17 |
15894 |
114 |
12 |
41 |
|
|
|
|
18 |
16 |
8 |
27 |
17498 |
|
|
|
|
19 |
12 |
30 |
12 |
18111 |
|
Source: |
|
|
20 |
15750 |
13 |
23 |
117 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
21 |
3488 |
385 |
15175 |
192 |
|
|
|