THRB_1

 

 

 

 

A

C

G

T

 

Name

THRB

1

2864

2112

6564

3974

 

TF group

nuclearreceptor

2

56

758

36

14698

 

Polypeptide used

DBD

3

323

232

18361

84

 

Ligand sequence

TGGCAA30NACT

4

11124

136

227

2729

 

Batch of SELEX experiment

AI

5

34

14883

69

12

 

Seed sequence

NTGACCTNATNAGGTCAN

6

11

14905

62

9

 

Hamming distance of sequences to seed

2

7

13

3718

78

13332

 

SELEX cycle

4

8

311

4050

5335

6260

 

Number of repeats

dimeric

9

11474

241

1713

17

 

Comment

 

10

27

1699

312

14244

 

Representative matrix

no

11

6477

2720

4749

383

 

 

 

12

11157

24

2276

7

 

 

 

13

11

5

17427

5

 

 

 

14

6

5

17594

24

 

 

 

15

3521

546

444

12956

 

 

 

16

396

13653

1342

381

 

Source:

 

17

12245

8

474

27

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

2742

5696

1726

4460

 

 

 

 

 

 

 

 

 

 

 

 

THRB_2

 

 

 

 

A

C

G

T

 

Name

THRB

1

2851

1430

7901

5028

 

TF group

nuclearreceptor

2

67

496

74

16605

 

Polypeptide used

DBD

3

789

350

18826

79

 

Ligand sequence

TGGCAA30NACT

4

11092

164

343

3105

 

Batch of SELEX experiment

AI

5

27

16303

35

6

 

Seed sequence

NTGACCTNNNNNAGGTCAN

6

20

16272

43

9

 

Hamming distance of sequences to seed

2

7

11

2316

66

15096

 

SELEX cycle

4

8

373

4706

3316

8722

 

Number of repeats

dimeric

9

10870

46

3121

129

 

Comment

 

10

3755

3028

4289

5195

 

Representative matrix

yes

11

65

2761

295

13531

 

 

 

12

9166

1570

3897

198

 

 

 

13

13115

25

921

9

 

 

 

14

11

6

19527

102

 

 

 

15

8

3

19500

259

 

 

 

16

1988

265

303

15278

 

 

 

17

137

15699

717

385

 

Source:

 

18

13448

30

617

22

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

3456

6692

1831

3985

 

 

 

 

 

 

 

 

 

 

 

 

THRB_3

 

 

 

 

A

C

G

T

 

Name

THRB

1

3018

1172

4126

4040

 

TF group

nuclearreceptor

2

36

549

36

12272

 

Polypeptide used

DBD

3

346

312

14949

81

 

Ligand sequence

TGGCAA30NACT

4

9290

164

222

1691

 

Batch of SELEX experiment

AI

5

44

12375

31

4

 

Seed sequence

NTGACCTYANNTRAGGTCAN

6

16

12237

117

15

 

Hamming distance of sequences to seed

2

7

6

1359

58

12099

 

SELEX cycle

4

8

591

4176

1662

7269

 

Number of repeats

dimeric

9

9341

143

2373

11

 

Comment

 

10

2322

3851

2471

3602

 

Representative matrix

yes

11

5130

1582

1143

3439

 

 

 

12

104

2390

129

11950

 

 

 

13

5780

1614

5244

222

 

 

 

14

10148

14

1074

5

 

 

 

15

5

72

14323

17

 

 

 

16

3

72

14455

56

 

 

 

17

4543

310

269

10351

 

 

 

18

469

11163

804

401

 

Source:

 

19

10394

27

440

108

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

20

2053

5442

2326

2221