|
THRA |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
THRA |
1 |
5202 |
1118 |
8177 |
3480 |
|
TF group |
nuclearreceptor |
2 |
60 |
760 |
51 |
16918 |
|
Polypeptide used |
FL |
3 |
452 |
544 |
22136 |
171 |
|
Ligand sequence |
TCGGCC40NCGT |
4 |
13347 |
225 |
259 |
3005 |
|
Batch of SELEX experiment |
AI |
5 |
39 |
13166 |
9 |
15 |
|
Seed sequence |
NTGACCTNATNAGGTCAN |
6 |
27 |
13134 |
0 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
6 |
1989 |
148 |
16460 |
|
SELEX cycle |
4 |
8 |
226 |
5334 |
2914 |
7987 |
|
Number of repeats |
dimeric |
9 |
13247 |
219 |
3454 |
32 |
|
Comment |
|
10 |
95 |
2345 |
321 |
15939 |
|
Representative matrix |
yes |
11 |
8052 |
1021 |
8054 |
234 |
|
|
|
12 |
14208 |
31 |
1420 |
0 |
|
|
|
13 |
11 |
26 |
22560 |
10 |
|
|
|
14 |
0 |
0 |
22155 |
147 |
|
|
|
15 |
4315 |
176 |
252 |
15114 |
|
|
|
16 |
77 |
13245 |
851 |
376 |
|
Source: |
|
17 |
13960 |
207 |
916 |
26 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
3432 |
5742 |
1817 |
4582 |
|
|
|