|
|
TBX4_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
TBX4 |
|
1 |
18646 |
437 |
2353 |
1283 |
|
TF group |
TBX |
|
2 |
3082 |
2328 |
18646 |
1162 |
|
Polypeptide used |
DBD |
|
3 |
38 |
189 |
18646 |
33 |
|
Ligand sequence |
TACTTG40NTTC |
|
4 |
0 |
1644 |
191 |
18646 |
|
Batch of SELEX experiment |
AI |
|
5 |
0 |
0 |
18646 |
0 |
|
Seed sequence |
AGGTGTGA |
|
6 |
1551 |
2859 |
304 |
18646 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1355 |
5396 |
18646 |
8384 |
|
SELEX cycle |
3 |
|
8 |
18646 |
588 |
1733 |
965 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX4_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
TBX4 |
|
1 |
7083 |
435 |
1498 |
967 |
|
TF group |
TBX |
|
2 |
2230 |
1609 |
9621 |
806 |
|
Polypeptide used |
DBD |
|
3 |
41 |
298 |
11051 |
103 |
|
Ligand sequence |
TACTTG40NTTC |
|
4 |
30 |
1521 |
113 |
10976 |
|
Batch of SELEX experiment |
AI |
|
5 |
15 |
7 |
11099 |
10 |
|
Seed sequence |
AGGTGTNANWWNTNACACCT |
|
6 |
1673 |
2025 |
388 |
10138 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
542 |
1557 |
6194 |
2044 |
|
SELEX cycle |
3 |
|
8 |
7293 |
331 |
1668 |
491 |
|
Number of repeats |
dimeric |
|
9 |
3270 |
1618 |
1772 |
2439 |
|
Comment |
|
|
10 |
5725 |
493 |
750 |
2644 |
|
Representative
matrix |
no |
|
11 |
3782 |
764 |
656 |
5371 |
|
|
|
|
12 |
2627 |
1692 |
2275 |
2775 |
|
|
|
|
13 |
855 |
2137 |
522 |
10221 |
|
|
|
|
14 |
2207 |
3675 |
2363 |
525 |
|
|
|
|
15 |
7258 |
366 |
1505 |
1051 |
|
|
|
|
16 |
17 |
8099 |
20 |
18 |
|
|
|
|
17 |
7642 |
30 |
1094 |
15 |
|
|
|
|
18 |
99 |
7992 |
233 |
29 |
|
Source: |
|
|
19 |
891 |
7030 |
1756 |
1724 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
20 |
1242 |
1665 |
487 |
10341 |
|
|
|