TBX21_d1

 

 

 

 

A

C

G

T

 

Name

TBX21

1

2552

1729

11405

1649

 

TF group

TBX

2

175

423

13641

385

 

Polypeptide used

DBD

3

67

1387

125

13164

 

Ligand sequence

TACTGC40NGTC

4

69

34

13932

39

 

Batch of SELEX experiment

AI

5

1547

2507

168

12163

 

Seed sequence

GGTGTGANNTCACACC

6

1092

855

12482

2687

 

Hamming distance of sequences to seed

2

7

9191

28

240

103

 

SELEX cycle

3

8

4025

2070

837

3535

 

Number of repeats

dimeric

9

3533

1224

1916

4604

 

Comment

 

10

260

219

100

13524

 

Representative matrix

no

11

2594

7499

1365

760

 

 

 

12

8618

145

2123

1063

 

 

 

13

14

8478

41

40

 

 

 

14

8991

63

1184

52

 

Source:

 

15

240

8477

313

72

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

1067

7761

1333

2231

 

 

 

 

 

 

 

 

 

 

 

 

TBX21_m1

 

 

 

 

A

C

G

T

 

Name

TBX21

1

20083

4960

13967

12371

 

TF group

TBX

2

51381

568

6567

2604

 

Polypeptide used

DBD

3

5828

4587

51381

4351

 

Ligand sequence

TACTGC40NGTC

4

24

219

51381

175

 

Batch of SELEX experiment

AI

5

49

2502

206

51381

 

Seed sequence

NAGGTGTGAA

6

22

49

51381

31

 

Hamming distance of sequences to seed

1

7

1925

7069

242

51381

 

SELEX cycle

3

8

772

2557

51381

5174

 

Number of repeats

monomeric

9

51381

98

412

41

 

Comment

 

10

51381

9473

4832

17787

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TBX21_d2

 

 

 

 

A

C

G

T

 

Name

TBX21

1

362

1470

237

13899

 

TF group

TBX

2

2735

5472

1554

354

 

Polypeptide used

DBD

3

9452

149

2124

700

 

Ligand sequence

TACTGC40NGTC

4

67

9112

52

16

 

Batch of SELEX experiment

AI

5

9853

38

1111

27

 

Seed sequence

TNACACCTNNNAGGTGTNA

6

184

9077

201

94

 

Hamming distance of sequences to seed

2

7

1312

8039

1698

1926

 

SELEX cycle

3

8

1384

2243

614

13172

 

Number of repeats

dimeric

9

2851

3053

1789

3915

 

Comment

 

10

3262

2535

2994

2961

 

Representative matrix

yes

11

4483

1080

4004

2546

 

 

 

12

9483

349

1716

875

 

 

 

13

2379

1932

12765

1691

 

 

 

14

109

443

14960

253

 

 

 

15

54

1373

183

13971

 

 

 

16

27

11

15077

16

 

 

 

17

1357

2732

225

12798

 

Source:

 

18

438

1038

10048

2490

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

9769

78

1022

199

 

 

 

 

 

 

 

 

 

 

 

 

TBX21_d3

 

 

 

 

A

C

G

T

 

Name

TBX21

1

404

25

5030

160

 

TF group

TBX

2

2

0

5648

4

 

Polypeptide used

full

3

0

74

8

4564

 

Ligand sequence

TGGTCT20NCTT

4

4

4

5233

0

 

Batch of SELEX experiment

AD

5

33

101

3

4258

 

Seed sequence

GGTGTGAWATCACACC

6

13

12

5133

88

 

Hamming distance of sequences to seed

2

7

3386

16

0

9

 

SELEX cycle

4

8

1112

323

76

2679

 

Number of repeats

dimeric

9

3129

286

588

83

 

Comment

 

10

20

19

2

4342

 

Representative matrix

no

11

712

3620

131

46

 

 

 

12

3479

0

24

36

 

 

 

13

8

3857

0

2

 

 

 

14

3519

6

0

4

 

Source:

 

15

28

3601

12

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

184

3161

44

64

 

 

 

 

 

 

 

 

 

 

 

 

TBX21_m2

 

 

 

 

A

C

G

T

 

Name

TBX21

1

2322

263

937

872

 

TF group

TBX

2

4395

30

359

146

 

Polypeptide used

full

3

612

239

4395

398

 

Ligand sequence

TGGTCT20NCTT

4

2

17

4395

33

 

Batch of SELEX experiment

AD

5

6

180

16

4395

 

Seed sequence

NAGGTGTGAA

6

1

0

4395

2

 

Hamming distance of sequences to seed

1

7

185

331

34

4395

 

SELEX cycle

3

8

80

126

4395

364

 

Number of repeats

monomeric

9

4395

0

38

0

 

Comment

 

10

4395

441

317

1287

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TBX21_d4

 

 

 

 

A

C

G

T

 

Name

TBX21

1

6

75

0

3141

 

TF group

TBX

2

404

1841

537

31

 

Polypeptide used

full

3

2242

5

12

4

 

Ligand sequence

TGGTCT20NCTT

4

1

2556

0

3

 

Batch of SELEX experiment

AD

5

2189

1

9

2

 

Seed sequence

TNACACCTNNNAGGTGTNA

6

23

2600

54

4

 

Hamming distance of sequences to seed

2

7

164

2212

39

558

 

SELEX cycle

4

8

663

234

38

2013

 

Number of repeats

dimeric

9

1176

557

460

523

 

Comment

 

10

1479

591

244

230

 

Representative matrix

no

11

1673

100

598

285

 

 

 

12

2081

0

166

97

 

 

 

13

136

85

3906

43

 

 

 

14

3

5

3889

2

 

 

 

15

4

237

17

2172

 

 

 

16

8

14

4491

5

 

 

 

17

33

29

3

3310

 

Source:

 

18

17

29

3756

384

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

1960

7

26

0