TBX20_d1

 

 

 

 

A

C

G

T

 

Name

TBX20

1

17764

380

2350

1111

 

TF group

TBX

2

2430

929

17313

887

 

Polypeptide used

DBD

3

18

128

18570

80

 

Ligand sequence

TACTCA40NCTC

4

26

783

98

17478

 

Batch of SELEX experiment

AI

5

19

39

18661

19

 

Seed sequence

AGGTGTGAAGGTGTGA

6

841

898

101

17185

 

Hamming distance of sequences to seed

2

7

972

3081

16647

4961

 

SELEX cycle

3

8

18652

20

194

93

 

Number of repeats

dimeric

9

16680

413

4666

2720

 

Comment

 

10

4616

7530

15598

1481

 

Representative matrix

yes

11

31

1802

17689

4072

 

 

 

12

90

5837

194

16249

 

 

 

13

35

23

18879

21

 

 

 

14

569

1339

85

16919

 

Source:

 

15

412

3296

16860

4227

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

18786

61

199

54

 

 

 

 

 

 

 

 

 

 

 

 

TBX20_d2

 

 

 

 

A

C

G

T

 

Name

TBX20

1

1909

44

178

117

 

TF group

TBX

2

283

114

2716

333

 

Polypeptide used

DBD

3

3

18

2911

5

 

Ligand sequence

TACTCA40NCTC

4

4

218

21

2609

 

Batch of SELEX experiment

AI

5

2

0

2925

1

 

Seed sequence

AGGTGTGAWWWTCACACCT

6

97

243

13

2553

 

Hamming distance of sequences to seed

2

7

72

251

2692

129

 

SELEX cycle

3

8

1954

4

10

1

 

Number of repeats

dimeric

9

1590

198

178

324

 

Comment

 

10

1362

216

143

783

 

Representative matrix

no

11

616

60

660

1742

 

 

 

12

4

6

4

2707

 

 

 

13

356

1790

731

88

 

 

 

14

1940

11

261

41

 

 

 

15

3

2083

3

9

 

 

 

16

1928

2

222

4

 

 

 

17

9

2073

24

49

 

Source:

 

18

187

1790

567

525

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

290

382

82

2480

 

 

 

 

 

 

 

 

 

 

 

 

TBX20_m1

 

 

 

 

A

C

G

T

 

Name

TBX20

1

3346

2447

7268

2357

 

TF group

TBX

2

2812

1749

1814

1774

 

Polypeptide used

DBD

3

4086

1898

2103

2165

 

Ligand sequence

TACTCA40NCTC

4

3995

697

1807

1650

 

Batch of SELEX experiment

AI

5

8149

69

721

365

 

Seed sequence

HNHNAGGTGTGANHH

6

1248

484

8149

635

 

Hamming distance of sequences to seed

1

7

0

35

8149

51

 

SELEX cycle

3

8

24

465

104

8149

 

Number of repeats

monomeric

9

8

0

8149

25

 

Comment

 

10

258

548

43

8149

 

Representative matrix

no

11

216

1078

8149

2149

 

 

 

12

8149

9

21

37

 

 

 

13

5875

664

395

1216

 

Source:

 

14

3508

3203

2410

1439

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

1838

1543

4919

4768

 

 

 

 

 

 

 

 

 

 

 

 

TBX20_m2

 

 

 

 

A

C

G

T

 

Name

TBX20

1

197

4

121

250

 

TF group

TBX

2

572

23

54

24

 

Polypeptide used

full

3

50

34

572

26

 

Ligand sequence

TCTTCT20NCTG

4

0

0

572

40

 

Batch of SELEX experiment

AE

5

0

0

10

572

 

Seed sequence

NAGGTGTGAAN

6

0

1

572

4

 

Hamming distance of sequences to seed

1

7

8

1

11

572

 

SELEX cycle

4

8

48

10

572

82

 

Number of repeats

monomeric

9

572

1

6

10

 

Comment

 

10

572

16

53

170

 

Representative matrix

no

11

154

60

300

59

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TBX20_d3

 

 

 

 

A

C

G

T

 

Name

TBX20

1

146

0

22

7

 

TF group

TBX

2

35

6

127

3

 

Polypeptide used

full

3

0

0

144

0

 

Ligand sequence

TCTTCT20NCTG

4

0

0

0

122

 

Batch of SELEX experiment

AE

5

0

0

142

0

 

Seed sequence

AGGTGTKANGGTGTSA

6

1

0

0

123

 

Hamming distance of sequences to seed

2

7

4

6

96

33

 

SELEX cycle

4

8

144

0

0

0

 

Number of repeats

dimeric

9

48

32

26

38

 

Comment

possibly partial

10

16

13

109

26

 

Representative matrix

no

11

0

0

100

40

 

 

 

12

0

7

0

125

 

 

 

13

0

9

137

0

 

 

 

14

0

20

2

123

 

Source:

 

15

0

39

106

12

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

143

0

2

0