|
|
Sox17_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Sox17 |
|
1 |
2302 |
21 |
28 |
40 |
|
TF group |
HMG |
|
2 |
2302 |
2 |
14 |
3 |
|
Polypeptide used |
DBD |
|
3 |
1 |
2302 |
1 |
8 |
|
Ligand sequence |
TATTGT20NGTG |
|
4 |
2302 |
0 |
1 |
5 |
|
Batch of SELEX experiment |
AF |
|
5 |
2302 |
113 |
31 |
3 |
|
Seed sequence |
AACAATNNCATTGTT |
|
6 |
0 |
0 |
0 |
2302 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1008 |
33 |
183 |
1078 |
|
SELEX cycle |
3 |
|
8 |
617 |
253 |
730 |
702 |
|
Number of repeats |
dimeric |
|
9 |
97 |
2302 |
30 |
164 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
2302 |
0 |
1 |
0 |
|
Representative matrix |
yes |
|
11 |
0 |
6 |
664 |
2302 |
|
|
|
|
12 |
8 |
0 |
23 |
2302 |
|
|
|
|
13 |
3 |
0 |
2302 |
1 |
|
Source: |
|
|
14 |
5 |
11 |
9 |
2302 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
45 |
43 |
39 |
2302 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Sox17_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Sox17 |
|
1 |
441 |
12 |
16 |
35 |
|
TF group |
HMG |
|
2 |
4 |
3 |
0 |
441 |
|
Polypeptide used |
DBD |
|
3 |
35 |
0 |
441 |
0 |
|
Ligand sequence |
TATTGT20NGTG |
|
4 |
441 |
1 |
0 |
1 |
|
Batch of SELEX experiment |
AF |
|
5 |
441 |
13 |
10 |
0 |
|
Seed sequence |
ATGAATWNCATTCAT |
|
6 |
1 |
0 |
0 |
441 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
200 |
12 |
18 |
241 |
|
SELEX cycle |
3 |
|
8 |
131 |
77 |
98 |
135 |
|
Number of repeats |
dimeric |
|
9 |
12 |
441 |
8 |
34 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
441 |
0 |
0 |
0 |
|
Representative
matrix |
no |
|
11 |
1 |
1 |
102 |
441 |
|
|
|
|
12 |
3 |
0 |
0 |
441 |
|
|
|
|
13 |
0 |
441 |
0 |
10 |
|
Source: |
|
|
14 |
441 |
0 |
0 |
3 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
32 |
12 |
23 |
441 |
|
|
|