|
|
Sox1_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Sox1 |
|
1 |
1369 |
396 |
356 |
195 |
|
TF group |
HMG |
|
2 |
2316 |
51 |
36 |
85 |
|
Polypeptide used |
DBD |
|
3 |
0 |
2316 |
0 |
0 |
|
Ligand sequence |
TGTCTA20NTCG |
|
4 |
2316 |
12 |
0 |
7 |
|
Batch of SELEX experiment |
AC |
|
5 |
2316 |
325 |
0 |
0 |
|
Seed sequence |
NACAATWNCATTGTN |
|
6 |
13 |
0 |
0 |
2316 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1682 |
5 |
359 |
634 |
|
SELEX cycle |
4 |
|
8 |
782 |
508 |
525 |
502 |
|
Number of repeats |
dimeric |
|
9 |
4 |
2316 |
51 |
33 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
2316 |
0 |
0 |
0 |
|
Representative matrix |
no |
|
11 |
0 |
0 |
244 |
2316 |
|
|
|
|
12 |
0 |
14 |
0 |
2316 |
|
|
|
|
13 |
0 |
0 |
2316 |
0 |
|
Source: |
|
|
14 |
79 |
260 |
58 |
2316 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
222 |
329 |
265 |
1499 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Sox1_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Sox1 |
|
1 |
1743 |
891 |
636 |
682 |
|
TF group |
HMG |
|
2 |
34 |
34 |
24 |
3951 |
|
Polypeptide used |
DBD |
|
3 |
34 |
14 |
3951 |
0 |
|
Ligand sequence |
TGTCTA20NTCG |
|
4 |
3951 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AC |
|
5 |
3951 |
361 |
0 |
0 |
|
Seed sequence |
NTGAATWNCATTCAN |
|
6 |
0 |
0 |
0 |
3951 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2763 |
31 |
651 |
1189 |
|
SELEX cycle |
4 |
|
8 |
1526 |
1025 |
755 |
645 |
|
Number of repeats |
dimeric |
|
9 |
27 |
3951 |
9 |
10 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
3951 |
0 |
0 |
0 |
|
Representative
matrix |
no |
|
11 |
0 |
0 |
248 |
3951 |
|
|
|
|
12 |
0 |
0 |
0 |
3951 |
|
|
|
|
13 |
0 |
3951 |
0 |
33 |
|
Source: |
|
|
14 |
3951 |
3 |
24 |
158 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
527 |
823 |
622 |
1979 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Sox1_3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Sox1 |
|
1 |
87 |
0 |
0 |
1493 |
|
TF group |
HMG |
|
2 |
0 |
1493 |
0 |
9 |
|
Polypeptide used |
DBD |
|
3 |
1493 |
0 |
0 |
0 |
|
Ligand sequence |
TGTCTA20NTCG |
|
4 |
1493 |
170 |
0 |
0 |
|
Batch of SELEX experiment |
AC |
|
5 |
13 |
0 |
0 |
1493 |
|
Seed sequence |
TCAATWNCATTGA |
|
6 |
1006 |
9 |
292 |
487 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
476 |
452 |
295 |
270 |
|
SELEX cycle |
4 |
|
8 |
6 |
1493 |
0 |
38 |
|
Number of repeats |
dimeric |
|
9 |
1493 |
0 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
0 |
0 |
33 |
1493 |
|
Representative matrix |
yes |
|
11 |
0 |
13 |
0 |
1493 |
|
|
|
|
12 |
23 |
14 |
1493 |
0 |
|
Source: |
|
|
13 |
1493 |
121 |
54 |
132 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Sox1_4 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Sox1 |
|
1 |
0 |
8 |
11 |
417 |
|
TF group |
HMG |
|
2 |
0 |
0 |
417 |
0 |
|
Polypeptide used |
DBD |
|
3 |
417 |
0 |
0 |
0 |
|
Ligand sequence |
TGTCTA20NTCG |
|
4 |
417 |
9 |
0 |
0 |
|
Batch of SELEX experiment |
AC |
|
5 |
0 |
27 |
0 |
417 |
|
Seed sequence |
TGAATNNNNATTCA |
|
6 |
190 |
5 |
122 |
100 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
129 |
55 |
140 |
93 |
|
SELEX cycle |
4 |
|
8 |
112 |
115 |
43 |
146 |
|
Number of repeats |
dimeric |
|
9 |
85 |
182 |
0 |
158 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
417 |
0 |
14 |
0 |
|
Representative matrix |
yes |
|
11 |
0 |
0 |
14 |
417 |
|
|
|
|
12 |
0 |
0 |
12 |
417 |
|
Source: |
|
|
13 |
0 |
417 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
417 |
11 |
0 |
0 |
|
|
|