SOX14_1

 

 

 

 

A

C

G

T

 

Name

SOX14

1

2057

21

21

174

 

TF group

HMG

2

0

2057

11

0

 

Polypeptide used

DBD

3

2057

5

0

33

 

Ligand sequence

TACCTA30NTCC

4

2057

726

0

4

 

Batch of SELEX experiment

AH

5

0

7

0

2057

 

Seed sequence

ACAATANCATTG

6

2057

14

76

495

 

Hamming distance of sequences to seed

1

7

940

642

265

210

 

SELEX cycle

4

8

14

2057

4

2

 

Number of repeats

dimeric

9

2057

0

1

1

 

Comment

possible binding to single stranded DNA

10

0

6

0

2057

 

Representative matrix

no

11

0

0

1

2057

 

Source:

 

12

5

2

2057

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

SOX14_2

 

 

 

 

A

C

G

T

 

Name

SOX14

1

324

120

143

131

 

TF group

HMG

2

12

0

4

717

 

Polypeptide used

DBD

3

0

0

717

3

 

Ligand sequence

TACCTA30NTCC

4

717

0

0

2

 

Batch of SELEX experiment

AH

5

717

93

0

0

 

Seed sequence

NTGAATNNCATTCAN

6

3

3

2

717

 

Hamming distance of sequences to seed

1

7

502

2

101

111

 

SELEX cycle

4

8

261

215

129

113

 

Number of repeats

dimeric

9

0

717

0

6

 

Comment

possible binding to single stranded DNA

10

717

0

5

0

 

Representative matrix

no

11

6

0

107

717

 

 

 

12

0

0

0

717

 

 

 

13

0

717

0

8

 

Source:

 

14

717

9

8

16

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

105

157

103

352

 

 

 

 

 

 

 

 

 

 

 

 

SOX14_3

 

 

 

 

A

C

G

T

 

Name

SOX14

1

72

14

3

253

 

TF group

HMG

2

11

253

0

2

 

Polypeptide used

DBD

3

253

0

3

0

 

Ligand sequence

TACCTA30NTCC

4

253

50

3

0

 

Batch of SELEX experiment

AH

5

0

3

2

253

 

Seed sequence

TCAATNNCATTGA

6

154

7

37

56

 

Hamming distance of sequences to seed

1

7

113

62

48

31

 

SELEX cycle

4

8

0

253

0

0

 

Number of repeats

dimeric

9

253

5

0

0

 

Comment

possible binding to single stranded DNA

10

1

3

33

253

 

Representative matrix

no

11

0

0

4

253

 

 

 

12

0

2

253

7

 

Source:

 

13

253

12

9

43

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764