|
SOX14_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX14 |
1 |
2057 |
21 |
21 |
174 |
|
TF group |
HMG |
2 |
0 |
2057 |
11 |
0 |
|
Polypeptide used |
DBD |
3 |
2057 |
5 |
0 |
33 |
|
Ligand sequence |
TACCTA30NTCC |
4 |
2057 |
726 |
0 |
4 |
|
Batch of SELEX experiment |
AH |
5 |
0 |
7 |
0 |
2057 |
|
Seed sequence |
ACAATANCATTG |
6 |
2057 |
14 |
76 |
495 |
|
Hamming distance of sequences to seed |
1 |
7 |
940 |
642 |
265 |
210 |
|
SELEX cycle |
4 |
8 |
14 |
2057 |
4 |
2 |
|
Number of repeats |
dimeric |
9 |
2057 |
0 |
1 |
1 |
|
Comment |
possible binding to single stranded DNA |
10 |
0 |
6 |
0 |
2057 |
|
Representative
matrix |
no |
11 |
0 |
0 |
1 |
2057 |
|
Source: |
|
12 |
5 |
2 |
2057 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
SOX14_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX14 |
1 |
324 |
120 |
143 |
131 |
|
TF group |
HMG |
2 |
12 |
0 |
4 |
717 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
717 |
3 |
|
Ligand sequence |
TACCTA30NTCC |
4 |
717 |
0 |
0 |
2 |
|
Batch of SELEX experiment |
AH |
5 |
717 |
93 |
0 |
0 |
|
Seed sequence |
NTGAATNNCATTCAN |
6 |
3 |
3 |
2 |
717 |
|
Hamming distance of sequences to seed |
1 |
7 |
502 |
2 |
101 |
111 |
|
SELEX cycle |
4 |
8 |
261 |
215 |
129 |
113 |
|
Number of repeats |
dimeric |
9 |
0 |
717 |
0 |
6 |
|
Comment |
possible binding to single stranded DNA |
10 |
717 |
0 |
5 |
0 |
|
Representative matrix |
no |
11 |
6 |
0 |
107 |
717 |
|
|
|
12 |
0 |
0 |
0 |
717 |
|
|
|
13 |
0 |
717 |
0 |
8 |
|
Source: |
|
14 |
717 |
9 |
8 |
16 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
105 |
157 |
103 |
352 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX14_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX14 |
1 |
72 |
14 |
3 |
253 |
|
TF group |
HMG |
2 |
11 |
253 |
0 |
2 |
|
Polypeptide used |
DBD |
3 |
253 |
0 |
3 |
0 |
|
Ligand sequence |
TACCTA30NTCC |
4 |
253 |
50 |
3 |
0 |
|
Batch of SELEX experiment |
AH |
5 |
0 |
3 |
2 |
253 |
|
Seed sequence |
TCAATNNCATTGA |
6 |
154 |
7 |
37 |
56 |
|
Hamming distance of sequences to seed |
1 |
7 |
113 |
62 |
48 |
31 |
|
SELEX cycle |
4 |
8 |
0 |
253 |
0 |
0 |
|
Number of repeats |
dimeric |
9 |
253 |
5 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
1 |
3 |
33 |
253 |
|
Representative
matrix |
no |
11 |
0 |
0 |
4 |
253 |
|
|
|
12 |
0 |
2 |
253 |
7 |
|
Source: |
|
13 |
253 |
12 |
9 |
43 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |