|
RXRG_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RXRG |
1 |
7824 |
3800 |
21426 |
1886 |
|
TF group |
nuclearreceptor |
2 |
14207 |
63 |
20865 |
20 |
|
Polypeptide used |
DBD |
3 |
49 |
4 |
23554 |
77 |
|
Ligand sequence |
TGGAAT20NGA |
4 |
102 |
9 |
22312 |
3946 |
|
Batch of SELEX experiment |
Y |
5 |
5 |
35 |
126 |
39123 |
|
Seed sequence |
GGGGTCAAAGGTCA |
6 |
28 |
56980 |
734 |
3942 |
|
Hamming distance of sequences to seed |
2 |
7 |
37922 |
0 |
76 |
4 |
|
SELEX cycle |
3 |
8 |
34468 |
14 |
970 |
574 |
|
Number of repeats |
dimeric |
9 |
33003 |
0 |
1634 |
5 |
|
Comment |
|
10 |
9 |
1 |
29532 |
20 |
|
Representative
matrix |
no |
11 |
12 |
1 |
27903 |
3913 |
|
|
|
12 |
2 |
17 |
134 |
37558 |
|
Source: |
|
13 |
78 |
49963 |
935 |
2999 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
36677 |
43 |
2323 |
27 |
|
|
|
|
|
|
|
|
|
|
|
|
RXRG_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RXRG |
1 |
1333 |
172 |
2068 |
42 |
|
TF group |
nuclearreceptor |
2 |
1826 |
3 |
1751 |
0 |
|
Polypeptide used |
DBD |
3 |
5 |
16 |
4503 |
28 |
|
Ligand sequence |
TGGAAT20NGA |
4 |
0 |
23 |
4463 |
144 |
|
Batch of SELEX experiment |
Y |
5 |
1 |
3 |
15 |
2595 |
|
Seed sequence |
RRGGTCATGACCYY |
6 |
2 |
2075 |
1 |
16 |
|
Hamming distance of sequences to seed |
2 |
7 |
2992 |
1 |
371 |
0 |
|
SELEX cycle |
3 |
8 |
0 |
184 |
0 |
2646 |
|
Number of repeats |
dimeric |
9 |
15 |
0 |
5085 |
0 |
|
Comment |
|
10 |
3091 |
2 |
0 |
0 |
|
Representative matrix |
no |
11 |
91 |
1554 |
1 |
0 |
|
|
|
12 |
3 |
1608 |
1 |
0 |
|
Source: |
|
13 |
2 |
1238 |
1 |
903 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
18 |
1304 |
147 |
685 |
|
|
|
|
|
|
|
|
|
|
|
|
RXRG_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RXRG |
1 |
124 |
21 |
441 |
1 |
|
TF group |
nuclearreceptor |
2 |
160 |
0 |
442 |
0 |
|
Polypeptide used |
full |
3 |
0 |
0 |
477 |
1 |
|
Ligand sequence |
TTCTCT20NTA |
4 |
0 |
0 |
471 |
12 |
|
Batch of SELEX experiment |
AD |
5 |
0 |
1 |
1 |
620 |
|
Seed sequence |
GGGGTCAAAGGTCA |
6 |
1 |
1008 |
1 |
5 |
|
Hamming distance of sequences to seed |
2 |
7 |
710 |
1 |
0 |
1 |
|
SELEX cycle |
4 |
8 |
707 |
1 |
2 |
1 |
|
Number of repeats |
dimeric |
9 |
705 |
1 |
1 |
1 |
|
Comment |
|
10 |
1 |
1 |
486 |
1 |
|
Representative
matrix |
no |
11 |
1 |
0 |
480 |
9 |
|
|
|
12 |
1 |
0 |
1 |
642 |
|
Source: |
|
13 |
0 |
983 |
1 |
8 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
734 |
0 |
5 |
0 |
|
|
|