RHOXF1_d1

 

 

 

 

A

C

G

T

 

Name

RHOXF1

1

3252

1502

6767

1051

 

TF group

homeodomain

2

954

775

6767

813

 

Polypeptide used

DBD

3

5227

1540

137

379

 

Ligand sequence

TGGATG30NTAT

4

128

43

61

6767

 

Batch of SELEX experiment

AI

5

2742

1021

1323

1681

 

Seed sequence

GGMTNAKCC

6

6767

0

11

68

 

Hamming distance of sequences to seed

1

7

482

97

2281

4486

 

SELEX cycle

4

8

893

6767

446

285

 

Number of repeats

dimeric

9

978

6767

1238

1730

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

RHOXF1_m1

 

 

 

 

A

C

G

T

 

Name

RHOXF1

1

3224

2644

1855

3193

 

TF group

homeodomain

2

2837

0

478

10916

 

Polypeptide used

DBD

3

5543

0

5373

1367

 

Ligand sequence

TGGATG30NTAT

4

10916

0

0

0

 

Batch of SELEX experiment

AI

5

0

0

3540

7376

 

Seed sequence

NTRAKCCN

6

0

10916

0

0

 

Hamming distance of sequences to seed

1

7

0

10916

0

2275

 

SELEX cycle

3

8

3223

3453

2117

2123

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

RHOXF1_d2

 

 

 

 

A

C

G

T

 

Name

RHOXF1

1

558

553

1651

198

 

TF group

homeodomain

2

73

193

1651

239

 

Polypeptide used

full

3

1060

591

11

110

 

Ligand sequence

TTAGAA20NTA

4

26

58

43

1651

 

Batch of SELEX experiment

AE

5

695

248

203

504

 

Seed sequence

GGMTNAKCC

6

1651

4

0

85

 

Hamming distance of sequences to seed

1

7

119

0

408

1243

 

SELEX cycle

4

8

0

1651

68

72

 

Number of repeats

dimeric

9

65

1651

82

173

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

RHOXF1_m2

 

 

 

 

A

C

G

T

 

Name

RHOXF1

1

1463

1699

856

2362

 

TF group

homeodomain

2

1705

252

300

6380

 

Polypeptide used

full

3

3332

0

3048

806

 

Ligand sequence

TTAGAA20NTA

4

6380

0

0

60

 

Batch of SELEX experiment

AE

5

0

0

1813

4567

 

Seed sequence

NTRAKCCN

6

155

6380

0

76

 

Hamming distance of sequences to seed

1

7

0

6380

44

970

 

SELEX cycle

4

8

1643

3128

784

825

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764