|
RARG_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RARG |
1 |
1188 |
1759 |
4748 |
156 |
|
TF group |
nuclearreceptor |
2 |
3654 |
394 |
2344 |
12 |
|
Polypeptide used |
DBD |
3 |
3 |
1 |
5096 |
7 |
|
Ligand sequence |
TGTTAT20NGA |
4 |
0 |
0 |
4813 |
481 |
|
Batch of SELEX experiment |
Y |
5 |
4 |
22 |
88 |
5660 |
|
Seed sequence |
GRGGTCAAAAGGTCANA |
6 |
2 |
7680 |
109 |
76 |
|
Hamming distance of sequences to seed |
2 |
7 |
6439 |
0 |
38 |
1 |
|
SELEX cycle |
3 |
8 |
6311 |
78 |
55 |
265 |
|
Number of repeats |
dimeric |
9 |
6298 |
19 |
409 |
665 |
|
Comment |
|
10 |
6302 |
19 |
315 |
1 |
|
Representative matrix |
no |
11 |
5 |
0 |
5139 |
1 |
|
|
|
12 |
0 |
0 |
5009 |
1370 |
|
|
|
13 |
24 |
20 |
40 |
5635 |
|
|
|
14 |
2 |
7766 |
76 |
81 |
|
|
|
15 |
6935 |
1 |
26 |
5 |
|
Source: |
|
16 |
1902 |
3299 |
1220 |
468 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
5029 |
948 |
1603 |
1574 |
|
|
|
|
|
|
|
|
|
|
|
|
RARG_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RARG |
1 |
1713 |
183 |
1110 |
184 |
|
TF group |
nuclearreceptor |
2 |
2426 |
79 |
537 |
3 |
|
Polypeptide used |
DBD |
3 |
2 |
0 |
2594 |
4 |
|
Ligand sequence |
TGTTAT20NGA |
4 |
1 |
0 |
2550 |
134 |
|
Batch of SELEX experiment |
Y |
5 |
4 |
11 |
31 |
2865 |
|
Seed sequence |
RRGGTCANNNARAGGTCA |
6 |
2 |
3933 |
16 |
12 |
|
Hamming distance of sequences to seed |
2 |
7 |
3292 |
5 |
19 |
1 |
|
SELEX cycle |
3 |
8 |
1077 |
855 |
226 |
799 |
|
Number of repeats |
dimeric |
9 |
642 |
1375 |
693 |
289 |
|
Comment |
|
10 |
591 |
1031 |
250 |
1168 |
|
Representative matrix |
no |
11 |
2603 |
378 |
290 |
898 |
|
|
|
12 |
1699 |
449 |
1241 |
119 |
|
|
|
13 |
2919 |
111 |
624 |
3 |
|
|
|
14 |
1 |
0 |
2587 |
3 |
|
|
|
15 |
1 |
0 |
2461 |
273 |
|
|
|
16 |
12 |
12 |
17 |
2774 |
|
Source: |
|
17 |
3 |
3928 |
15 |
20 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
3411 |
2 |
20 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
RARG_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RARG |
1 |
3505 |
464 |
2914 |
589 |
|
TF group |
nuclearreceptor |
2 |
5660 |
86 |
1988 |
3 |
|
Polypeptide used |
DBD |
3 |
4 |
4 |
6254 |
4 |
|
Ligand sequence |
TGTTAT20NGA |
4 |
0 |
5 |
6039 |
353 |
|
Batch of SELEX experiment |
Y |
5 |
32 |
51 |
34 |
7345 |
|
Seed sequence |
RRGGTCANNNRRGGTCA |
6 |
33 |
10998 |
10 |
27 |
|
Hamming distance of sequences to seed |
2 |
7 |
8789 |
12 |
75 |
3 |
|
SELEX cycle |
3 |
8 |
2523 |
3276 |
918 |
1698 |
|
Number of repeats |
dimeric |
9 |
1532 |
2980 |
1793 |
1646 |
|
Comment |
|
10 |
3959 |
1380 |
1287 |
1405 |
|
Representative matrix |
no |
11 |
3041 |
374 |
3504 |
237 |
|
|
|
12 |
6064 |
126 |
1779 |
6 |
|
|
|
13 |
5 |
1 |
6251 |
10 |
|
|
|
14 |
0 |
4 |
5445 |
984 |
|
|
|
15 |
35 |
42 |
67 |
7167 |
|
Source: |
|
16 |
49 |
10855 |
71 |
136 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
9348 |
98 |
98 |
14 |
|
|
|
|
|
|
|
|
|
|
|
|
RARG_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RARG |
1 |
208 |
97 |
2334 |
81 |
|
TF group |
nuclearreceptor |
2 |
2904 |
1 |
391 |
3 |
|
Polypeptide used |
full |
3 |
0 |
0 |
2287 |
2 |
|
Ligand sequence |
TCGGGG20NGA |
4 |
0 |
13 |
2272 |
3 |
|
Batch of SELEX experiment |
AE |
5 |
13 |
3 |
32 |
2677 |
|
Seed sequence |
GRGGTCAAAAGKTCAC |
6 |
2 |
4625 |
37 |
79 |
|
Hamming distance of sequences to seed |
2 |
7 |
3556 |
0 |
7 |
0 |
|
SELEX cycle |
3 |
8 |
3566 |
0 |
72 |
185 |
|
Number of repeats |
dimeric |
9 |
3600 |
13 |
4 |
3 |
|
Comment |
|
10 |
3491 |
4 |
137 |
0 |
|
Representative matrix |
no |
11 |
1 |
5 |
2188 |
2 |
|
|
|
12 |
0 |
0 |
1883 |
374 |
|
|
|
13 |
0 |
57 |
7 |
2634 |
|
|
|
14 |
0 |
4570 |
4 |
94 |
|
Source: |
|
15 |
3578 |
30 |
48 |
8 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
140 |
2792 |
514 |
851 |
|
|
|
|
|
|
|
|
|
|
|
|
RARG_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RARG |
1 |
117 |
4 |
100 |
6 |
|
TF group |
nuclearreceptor |
2 |
245 |
4 |
16 |
2 |
|
Polypeptide used |
full |
3 |
0 |
0 |
185 |
4 |
|
Ligand sequence |
TCGGGG20NGA |
4 |
0 |
1 |
182 |
7 |
|
Batch of SELEX experiment |
AE |
5 |
1 |
0 |
1 |
205 |
|
Seed sequence |
RRGGTCANNNARAGGTCA |
6 |
1 |
348 |
0 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
265 |
0 |
6 |
1 |
|
SELEX cycle |
3 |
8 |
193 |
7 |
38 |
8 |
|
Number of repeats |
dimeric |
9 |
9 |
58 |
106 |
39 |
|
Comment |
|
10 |
6 |
108 |
34 |
101 |
|
Representative matrix |
no |
11 |
229 |
20 |
18 |
54 |
|
|
|
12 |
134 |
6 |
87 |
4 |
|
|
|
13 |
203 |
9 |
66 |
1 |
|
|
|
14 |
1 |
2 |
172 |
1 |
|
|
|
15 |
0 |
2 |
138 |
49 |
|
|
|
16 |
1 |
5 |
3 |
204 |
|
Source: |
|
17 |
6 |
369 |
2 |
19 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
273 |
1 |
8 |
5 |
|
|
|
|
|
|
|
|
|
|
|
|
RARG_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RARG |
1 |
251 |
60 |
176 |
19 |
|
TF group |
nuclearreceptor |
2 |
345 |
15 |
88 |
0 |
|
Polypeptide used |
full |
3 |
10 |
9 |
371 |
4 |
|
Ligand sequence |
TCGGGG20NGA |
4 |
3 |
3 |
342 |
52 |
|
Batch of SELEX experiment |
AE |
5 |
19 |
12 |
34 |
392 |
|
Seed sequence |
RRGGTCANNNRRGGTCA |
6 |
25 |
580 |
18 |
26 |
|
Hamming distance of sequences to seed |
2 |
7 |
472 |
3 |
34 |
3 |
|
SELEX cycle |
3 |
8 |
210 |
112 |
25 |
108 |
|
Number of repeats |
dimeric |
9 |
29 |
165 |
137 |
110 |
|
Comment |
|
10 |
187 |
55 |
68 |
120 |
|
Representative matrix |
no |
11 |
162 |
74 |
178 |
18 |
|
|
|
12 |
304 |
29 |
109 |
6 |
|
|
|
13 |
11 |
65 |
343 |
11 |
|
|
|
14 |
6 |
6 |
321 |
72 |
|
|
|
15 |
16 |
22 |
24 |
371 |
|
Source: |
|
16 |
39 |
616 |
67 |
31 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
488 |
20 |
28 |
6 |
|
|
|
|
|
|
|
|
|
|
|
|
Rarg_7 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rarg |
1 |
12548 |
1655 |
11289 |
1309 |
|
TF group |
nuclearreceptor |
2 |
7220 |
147 |
3074 |
5 |
|
Polypeptide used |
DBD |
3 |
3 |
0 |
12765 |
0 |
|
Ligand sequence |
TATCTG20NTCG |
4 |
0 |
3 |
11969 |
1826 |
|
Batch of SELEX experiment |
Z |
5 |
20 |
35 |
64 |
10030 |
|
Seed sequence |
GRGGTCAAAAGKTCAC |
6 |
3 |
12653 |
38 |
79 |
|
Hamming distance of sequences to seed |
2 |
7 |
8844 |
2 |
15 |
0 |
|
SELEX cycle |
4 |
8 |
9169 |
49 |
114 |
257 |
|
Number of repeats |
dimeric |
9 |
8864 |
13 |
618 |
353 |
|
Comment |
|
10 |
9211 |
4 |
394 |
0 |
|
Representative matrix |
no |
11 |
1 |
1 |
13267 |
3 |
|
|
|
12 |
0 |
2 |
9298 |
2628 |
|
|
|
13 |
6 |
40 |
51 |
9774 |
|
|
|
14 |
0 |
11730 |
67 |
105 |
|
Source: |
|
15 |
9147 |
4 |
82 |
1 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
11044 |
4836 |
2470 |
5566 |
|
|
|
|
|
|
|
|
|
|
|
|
Rarg_8 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rarg |
1 |
2008 |
23 |
1088 |
99 |
|
TF group |
nuclearreceptor |
2 |
2923 |
6 |
82 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
3818 |
0 |
|
Ligand sequence |
TATCTG20NTCG |
4 |
1 |
0 |
3609 |
250 |
|
Batch of SELEX experiment |
Z |
5 |
3 |
3 |
2 |
2698 |
|
Seed sequence |
RRGGTCANNNARAGGTCA |
6 |
0 |
3911 |
4 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
2465 |
2 |
4 |
1 |
|
SELEX cycle |
4 |
8 |
1052 |
334 |
172 |
1109 |
|
Number of repeats |
dimeric |
9 |
537 |
1606 |
1008 |
214 |
|
Comment |
|
10 |
713 |
933 |
195 |
1118 |
|
Representative matrix |
no |
11 |
2479 |
129 |
140 |
221 |
|
|
|
12 |
2172 |
18 |
656 |
77 |
|
|
|
13 |
2500 |
14 |
320 |
0 |
|
|
|
14 |
0 |
0 |
3556 |
0 |
|
|
|
15 |
0 |
0 |
3329 |
226 |
|
|
|
16 |
2 |
0 |
0 |
3173 |
|
Source: |
|
17 |
0 |
3286 |
1 |
13 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
3197 |
0 |
0 |
1 |
|
|
|
|
|
|
|
|
|
|
|
|
Rarg_9 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rarg |
1 |
4074 |
10 |
806 |
31 |
|
TF group |
nuclearreceptor |
2 |
4543 |
7 |
267 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
4 |
5888 |
2 |
|
Ligand sequence |
TATCTG20NTCG |
4 |
0 |
0 |
5573 |
200 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
11 |
12 |
4309 |
|
Seed sequence |
RRGGTCANNNRRGGTCA |
6 |
2 |
6256 |
0 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
4044 |
3 |
12 |
0 |
|
SELEX cycle |
4 |
8 |
1394 |
2677 |
386 |
780 |
|
Number of repeats |
dimeric |
9 |
314 |
1778 |
2442 |
595 |
|
Comment |
|
10 |
3248 |
482 |
558 |
479 |
|
Representative
matrix |
no |
11 |
2745 |
58 |
2133 |
57 |
|
|
|
12 |
3603 |
32 |
838 |
2 |
|
|
|
13 |
0 |
0 |
5891 |
1 |
|
|
|
14 |
0 |
8 |
5040 |
319 |
|
|
|
15 |
14 |
2 |
0 |
4540 |
|
Source: |
|
16 |
7 |
5340 |
2 |
22 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
4764 |
5 |
6 |
0 |
|
|
|