|
RARB_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RARB |
1 |
19 |
0 |
1 |
2 |
|
TF group |
nuclearreceptor |
2 |
18 |
2 |
0 |
0 |
|
Polypeptide used |
full |
3 |
17 |
0 |
4 |
0 |
|
Ligand sequence |
TAGTTT20NTTT |
4 |
0 |
0 |
25 |
0 |
|
Batch of SELEX experiment |
W |
5 |
0 |
0 |
26 |
1 |
|
Seed sequence |
AARGGTCAAAAGGTCA |
6 |
0 |
0 |
0 |
23 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
22 |
0 |
0 |
|
SELEX cycle |
4 |
8 |
19 |
0 |
0 |
0 |
|
Number of repeats |
dimeric |
9 |
18 |
0 |
0 |
2 |
|
Comment |
< 100 counts |
10 |
17 |
0 |
9 |
1 |
|
Representative matrix |
no |
11 |
19 |
0 |
0 |
0 |
|
|
|
12 |
0 |
0 |
26 |
0 |
|
|
|
13 |
0 |
0 |
26 |
4 |
|
|
|
14 |
0 |
0 |
0 |
23 |
|
Source: |
|
15 |
0 |
23 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
21 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
Rarb_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rarb |
1 |
1098 |
257 |
181 |
413 |
|
TF group |
nuclearreceptor |
2 |
1348 |
33 |
239 |
91 |
|
Polypeptide used |
DBD |
3 |
1309 |
2 |
243 |
0 |
|
Ligand sequence |
TCGTGT20NCG |
4 |
0 |
0 |
1964 |
1 |
|
Batch of SELEX experiment |
P |
5 |
0 |
1 |
1941 |
31 |
|
Seed sequence |
AARGGTCAAAAGGTCA |
6 |
6 |
4 |
15 |
1777 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
1316 |
9 |
8 |
|
SELEX cycle |
4 |
8 |
1618 |
0 |
14 |
0 |
|
Number of repeats |
dimeric |
9 |
1559 |
11 |
3 |
84 |
|
Comment |
|
10 |
1443 |
4 |
173 |
24 |
|
Representative matrix |
no |
11 |
1541 |
0 |
30 |
0 |
|
|
|
12 |
1 |
0 |
1972 |
0 |
|
|
|
13 |
0 |
1 |
1774 |
272 |
|
|
|
14 |
1 |
8 |
4 |
1717 |
|
Source: |
|
15 |
1 |
1409 |
2 |
8 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
1563 |
0 |
3 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
Rarb_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rarb |
1 |
306 |
48 |
81 |
53 |
|
TF group |
nuclearreceptor |
2 |
278 |
1 |
178 |
7 |
|
Polypeptide used |
DBD |
3 |
395 |
1 |
43 |
0 |
|
Ligand sequence |
TCGTGT20NCG |
4 |
0 |
0 |
501 |
0 |
|
Batch of SELEX experiment |
P |
5 |
0 |
0 |
474 |
29 |
|
Seed sequence |
ARRGGTCANNNRRGGTCA |
6 |
0 |
1 |
2 |
497 |
|
Hamming distance of sequences to seed |
2 |
7 |
3 |
437 |
0 |
3 |
|
SELEX cycle |
4 |
8 |
489 |
0 |
0 |
0 |
|
Number of repeats |
dimeric |
9 |
141 |
145 |
70 |
81 |
|
Comment |
|
10 |
57 |
203 |
118 |
88 |
|
Representative matrix |
no |
11 |
299 |
64 |
23 |
72 |
|
|
|
12 |
208 |
3 |
216 |
6 |
|
|
|
13 |
352 |
0 |
108 |
0 |
|
|
|
14 |
0 |
0 |
503 |
1 |
|
|
|
15 |
1 |
0 |
426 |
78 |
|
|
|
16 |
0 |
2 |
4 |
471 |
|
Source: |
|
17 |
2 |
488 |
6 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
472 |
1 |
5 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
Rarb_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rarb |
1 |
610 |
3 |
39 |
0 |
|
TF group |
nuclearreceptor |
2 |
0 |
1 |
713 |
0 |
|
Polypeptide used |
DBD |
3 |
2 |
1 |
663 |
22 |
|
Ligand sequence |
TCGTGT20NCG |
4 |
0 |
2 |
0 |
694 |
|
Batch of SELEX experiment |
P |
5 |
1 |
686 |
2 |
1 |
|
Seed sequence |
RGGTCANNNARRGGTCA |
6 |
728 |
0 |
4 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
293 |
210 |
15 |
204 |
|
SELEX cycle |
4 |
8 |
249 |
252 |
140 |
64 |
|
Number of repeats |
dimeric |
9 |
38 |
239 |
116 |
281 |
|
Comment |
|
10 |
438 |
34 |
41 |
158 |
|
Representative
matrix |
no |
11 |
398 |
4 |
218 |
4 |
|
|
|
12 |
639 |
0 |
37 |
1 |
|
|
|
13 |
1 |
1 |
682 |
0 |
|
|
|
14 |
0 |
2 |
663 |
26 |
|
|
|
15 |
0 |
3 |
4 |
674 |
|
Source: |
|
16 |
0 |
765 |
0 |
4 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
693 |
0 |
2 |
1 |
|
|
|