RARB_1

 

 

 

 

A

C

G

T

 

Name

RARB

1

19

0

1

2

 

TF group

nuclearreceptor

2

18

2

0

0

 

Polypeptide used

full

3

17

0

4

0

 

Ligand sequence

TAGTTT20NTTT

4

0

0

25

0

 

Batch of SELEX experiment

W

5

0

0

26

1

 

Seed sequence

AARGGTCAAAAGGTCA

6

0

0

0

23

 

Hamming distance of sequences to seed

2

7

0

22

0

0

 

SELEX cycle

4

8

19

0

0

0

 

Number of repeats

dimeric

9

18

0

0

2

 

Comment

< 100 counts

10

17

0

9

1

 

Representative matrix

no

11

19

0

0

0

 

 

 

12

0

0

26

0

 

 

 

13

0

0

26

4

 

 

 

14

0

0

0

23

 

Source:

 

15

0

23

0

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

21

0

0

0

 

 

 

 

 

 

 

 

 

 

 

 

Rarb_2

 

 

 

 

A

C

G

T

 

Name

Rarb

1

1098

257

181

413

 

TF group

nuclearreceptor

2

1348

33

239

91

 

Polypeptide used

DBD

3

1309

2

243

0

 

Ligand sequence

TCGTGT20NCG

4

0

0

1964

1

 

Batch of SELEX experiment

P

5

0

1

1941

31

 

Seed sequence

AARGGTCAAAAGGTCA

6

6

4

15

1777

 

Hamming distance of sequences to seed

2

7

1

1316

9

8

 

SELEX cycle

4

8

1618

0

14

0

 

Number of repeats

dimeric

9

1559

11

3

84

 

Comment

 

10

1443

4

173

24

 

Representative matrix

no

11

1541

0

30

0

 

 

 

12

1

0

1972

0

 

 

 

13

0

1

1774

272

 

 

 

14

1

8

4

1717

 

Source:

 

15

1

1409

2

8

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

1563

0

3

2

 

 

 

 

 

 

 

 

 

 

 

 

Rarb_3

 

 

 

 

A

C

G

T

 

Name

Rarb

1

306

48

81

53

 

TF group

nuclearreceptor

2

278

1

178

7

 

Polypeptide used

DBD

3

395

1

43

0

 

Ligand sequence

TCGTGT20NCG

4

0

0

501

0

 

Batch of SELEX experiment

P

5

0

0

474

29

 

Seed sequence

ARRGGTCANNNRRGGTCA

6

0

1

2

497

 

Hamming distance of sequences to seed

2

7

3

437

0

3

 

SELEX cycle

4

8

489

0

0

0

 

Number of repeats

dimeric

9

141

145

70

81

 

Comment

 

10

57

203

118

88

 

Representative matrix

no

11

299

64

23

72

 

 

 

12

208

3

216

6

 

 

 

13

352

0

108

0

 

 

 

14

0

0

503

1

 

 

 

15

1

0

426

78

 

 

 

16

0

2

4

471

 

Source:

 

17

2

488

6

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

472

1

5

0

 

 

 

 

 

 

 

 

 

 

 

 

Rarb_4

 

 

 

 

A

C

G

T

 

Name

Rarb

1

610

3

39

0

 

TF group

nuclearreceptor

2

0

1

713

0

 

Polypeptide used

DBD

3

2

1

663

22

 

Ligand sequence

TCGTGT20NCG

4

0

2

0

694

 

Batch of SELEX experiment

P

5

1

686

2

1

 

Seed sequence

RGGTCANNNARRGGTCA

6

728

0

4

0

 

Hamming distance of sequences to seed

2

7

293

210

15

204

 

SELEX cycle

4

8

249

252

140

64

 

Number of repeats

dimeric

9

38

239

116

281

 

Comment

 

10

438

34

41

158

 

Representative matrix

no

11

398

4

218

4

 

 

 

12

639

0

37

1

 

 

 

13

1

1

682

0

 

 

 

14

0

2

663

26

 

 

 

15

0

3

4

674

 

Source:

 

16

0

765

0

4

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

693

0

2

1