|
POU6F2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
POU6F2 |
1 |
1848 |
321 |
582 |
546 |
|
TF group |
POU |
2 |
714 |
1181 |
2116 |
266 |
|
Polypeptide used |
DBD |
3 |
239 |
3297 |
219 |
257 |
|
Ligand sequence |
TGCTGT20NCG |
4 |
75 |
64 |
114 |
3297 |
|
Batch of SELEX experiment |
V |
5 |
1192 |
2105 |
50 |
81 |
|
Seed sequence |
NSCTMATTAN |
6 |
3297 |
75 |
0 |
21 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
4 |
0 |
3297 |
|
SELEX cycle |
3 |
8 |
0 |
12 |
41 |
3297 |
|
Number of repeats |
monomeric |
9 |
3297 |
27 |
22 |
53 |
|
Comment |
|
10 |
1268 |
546 |
205 |
1278 |
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
POU6F2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
POU6F2 |
1 |
389 |
306 |
145 |
571 |
|
TF group |
POU |
2 |
0 |
1 |
1 |
1683 |
|
Polypeptide used |
DBD |
3 |
1025 |
2 |
7 |
82 |
|
Ligand sequence |
TGCTGT20NCG |
4 |
1021 |
4 |
3 |
0 |
|
Batch of SELEX experiment |
V |
5 |
22 |
22 |
81 |
1638 |
|
Seed sequence |
WTAATKAGCTMATTAW |
6 |
18 |
39 |
885 |
790 |
|
Hamming distance of sequences to seed |
2 |
7 |
1042 |
9 |
3 |
23 |
|
SELEX cycle |
3 |
8 |
27 |
185 |
1618 |
99 |
|
Number of repeats |
dimeric |
9 |
57 |
933 |
65 |
53 |
|
Comment |
|
10 |
36 |
10 |
11 |
1614 |
|
Representative matrix |
no |
11 |
650 |
375 |
15 |
31 |
|
|
|
12 |
1082 |
23 |
8 |
11 |
|
|
|
13 |
8 |
0 |
0 |
1550 |
|
|
|
14 |
49 |
1 |
0 |
1515 |
|
Source: |
|
15 |
1090 |
0 |
0 |
5 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
613 |
87 |
255 |
396 |
|
|
|
|
|
|
|
|
|
|
|
|
POU6F2_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
POU6F2 |
1 |
465 |
1752 |
3597 |
203 |
|
TF group |
POU |
2 |
149 |
5350 |
127 |
221 |
|
Polypeptide used |
full |
3 |
98 |
30 |
78 |
5350 |
|
Ligand sequence |
TATCAT20NCG |
4 |
3912 |
1438 |
9 |
0 |
|
Batch of SELEX experiment |
AC |
5 |
5350 |
26 |
0 |
9 |
|
Seed sequence |
SCTMATTANN |
6 |
2 |
0 |
0 |
5350 |
|
Hamming distance of sequences to seed |
1 |
7 |
17 |
12 |
6 |
5350 |
|
SELEX cycle |
4 |
8 |
5350 |
28 |
15 |
17 |
|
Number of repeats |
monomeric |
9 |
1320 |
1197 |
2148 |
685 |
|
Comment |
|
10 |
2084 |
1091 |
736 |
1439 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |