|
NR2F6_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NR2F6 |
1 |
1792 |
254 |
1852 |
183 |
|
TF group |
nuclearreceptor |
2 |
1968 |
7 |
1525 |
2 |
|
Polypeptide used |
DBD |
3 |
2 |
0 |
3314 |
15 |
|
Ligand sequence |
TGTGGA20NGA |
4 |
4 |
1 |
3325 |
17 |
|
Batch of SELEX experiment |
Y |
5 |
1 |
2 |
10 |
3412 |
|
Seed sequence |
RRGGTCAAAAGGTCA |
6 |
1 |
4937 |
8 |
112 |
|
Hamming distance of sequences to seed |
2 |
7 |
4034 |
5 |
31 |
15 |
|
SELEX cycle |
3 |
8 |
3365 |
145 |
148 |
513 |
|
Number of repeats |
dimeric |
9 |
3071 |
39 |
601 |
609 |
|
Comment |
|
10 |
4103 |
1 |
184 |
0 |
|
Representative matrix |
no |
11 |
3 |
0 |
3251 |
0 |
|
|
|
12 |
3 |
0 |
3244 |
24 |
|
|
|
13 |
0 |
2 |
30 |
3331 |
|
Source: |
|
14 |
4 |
4931 |
20 |
120 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
3819 |
2 |
304 |
6 |
|
|
|
|
|
|
|
|
|
|
|
|
NR2F6_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NR2F6 |
1 |
4381 |
1100 |
5303 |
891 |
|
TF group |
nuclearreceptor |
2 |
8329 |
33 |
3734 |
5 |
|
Polypeptide used |
DBD |
3 |
10 |
1 |
10418 |
95 |
|
Ligand sequence |
TGTGGA20NGA |
4 |
15 |
3 |
10366 |
130 |
|
Batch of SELEX experiment |
Y |
5 |
1 |
42 |
79 |
11035 |
|
Seed sequence |
RRGGTCAAAGGTCA |
6 |
73 |
15733 |
112 |
852 |
|
Hamming distance of sequences to seed |
2 |
7 |
13750 |
0 |
40 |
1 |
|
SELEX cycle |
3 |
8 |
13074 |
35 |
470 |
272 |
|
Number of repeats |
dimeric |
9 |
13254 |
0 |
502 |
2 |
|
Comment |
|
10 |
5 |
3 |
10283 |
14 |
|
Representative matrix |
no |
11 |
27 |
3 |
10049 |
235 |
|
|
|
12 |
1 |
39 |
78 |
10827 |
|
Source: |
|
13 |
6 |
16374 |
149 |
539 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
12817 |
87 |
1276 |
24 |
|
|
|
|
|
|
|
|
|
|
|
|
NR2F6_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NR2F6 |
1 |
152 |
68 |
163 |
55 |
|
TF group |
nuclearreceptor |
2 |
216 |
11 |
158 |
6 |
|
Polypeptide used |
full |
3 |
10 |
7 |
312 |
21 |
|
Ligand sequence |
TCTTGA20NGA |
4 |
11 |
8 |
305 |
24 |
|
Batch of SELEX experiment |
AE |
5 |
6 |
18 |
25 |
385 |
|
Seed sequence |
RRGGTCAAAGGTCA |
6 |
11 |
523 |
18 |
56 |
|
Hamming distance of sequences to seed |
2 |
7 |
454 |
6 |
8 |
8 |
|
SELEX cycle |
3 |
8 |
425 |
11 |
42 |
35 |
|
Number of repeats |
dimeric |
9 |
450 |
2 |
35 |
0 |
|
Comment |
|
10 |
2 |
2 |
320 |
5 |
|
Representative
matrix |
no |
11 |
4 |
1 |
314 |
16 |
|
|
|
12 |
2 |
10 |
15 |
419 |
|
Source: |
|
13 |
1 |
614 |
21 |
59 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
449 |
7 |
44 |
7 |
|
|
|
|
|
|
|
|
|
|
|
|
Nr2f6_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Nr2f6 |
1 |
100 |
16 |
172 |
0 |
|
TF group |
nuclearreceptor |
2 |
265 |
0 |
53 |
3 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
210 |
0 |
|
Ligand sequence |
TAGTTT20NCG |
4 |
1 |
0 |
183 |
0 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
0 |
1 |
378 |
|
Seed sequence |
RRGGTCAAAAGGTCA |
6 |
0 |
667 |
1 |
51 |
|
Hamming distance of sequences to seed |
2 |
7 |
494 |
30 |
0 |
1 |
|
SELEX cycle |
4 |
8 |
406 |
4 |
7 |
9 |
|
Number of repeats |
dimeric |
9 |
165 |
0 |
94 |
59 |
|
Comment |
|
10 |
258 |
0 |
0 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
324 |
0 |
|
|
|
12 |
0 |
0 |
155 |
5 |
|
|
|
13 |
2 |
0 |
0 |
369 |
|
Source: |
|
14 |
0 |
678 |
0 |
3 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
446 |
0 |
9 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
Nr2f6_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Nr2f6 |
1 |
880 |
58 |
1152 |
206 |
|
TF group |
nuclearreceptor |
2 |
1668 |
0 |
569 |
1 |
|
Polypeptide used |
DBD |
3 |
6 |
0 |
2459 |
76 |
|
Ligand sequence |
TAGTTT20NCG |
4 |
1 |
0 |
2287 |
60 |
|
Batch of SELEX experiment |
Z |
5 |
0 |
13 |
2 |
2147 |
|
Seed sequence |
RRGGTCAAAGGTCA |
6 |
67 |
2935 |
0 |
385 |
|
Hamming distance of sequences to seed |
2 |
7 |
2166 |
0 |
0 |
8 |
|
SELEX cycle |
4 |
8 |
2552 |
2 |
12 |
38 |
|
Number of repeats |
dimeric |
9 |
2736 |
0 |
36 |
1 |
|
Comment |
|
10 |
0 |
0 |
3021 |
12 |
|
Representative
matrix |
no |
11 |
0 |
0 |
2918 |
70 |
|
|
|
12 |
0 |
10 |
8 |
2419 |
|
Source: |
|
13 |
0 |
2813 |
50 |
186 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
1774 |
3 |
139 |
10 |
|
|
|