NR2E1_m1

 

 

 

 

A

C

G

T

 

Name

NR2E1

1

1118

244

191

401

 

TF group

nuclearreceptor

2

1118

89

448

369

 

Polypeptide used

full

3

1118

1

101

19

 

Ligand sequence

TAACAA20NACA

4

1118

0

74

5

 

Batch of SELEX experiment

W

5

40

0

1118

8

 

Seed sequence

AAAAGTCAA

6

0

58

0

1118

 

Hamming distance of sequences to seed

1

7

11

1118

12

112

 

SELEX cycle

4

8

1118

0

0

0

 

Number of repeats

monomeric

9

1118

131

117

247

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

NR2E1_d1

 

 

 

 

A

C

G

T

 

Name

NR2E1

1

125

22

31

13

 

TF group

nuclearreceptor

2

155

20

38

21

 

Polypeptide used

full

3

55

9

155

8

 

Ligand sequence

TAACAA20NACA

4

0

30

15

155

 

Batch of SELEX experiment

W

5

4

155

10

17

 

Seed sequence

RAGTCAANAAGTCA

6

155

0

9

0

 

Hamming distance of sequences to seed

1

7

155

25

25

38

 

SELEX cycle

4

8

53

9

31

63

 

Number of repeats

dimeric

9

155

0

6

26

 

Comment

 

10

155

8

21

5

 

Representative matrix

no

11

23

4

155

0

 

 

 

12

5

36

0

155

 

Source:

 

13

0

155

9

29

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

155

0

17

0

 

 

 

 

 

 

 

 

 

 

 

 

Nr2e1_m2

 

 

 

 

A

C

G

T

 

Name

Nr2e1

1

1615

312

293

557

 

TF group

nuclearreceptor

2

1615

180

572

666

 

Polypeptide used

DBD

3

1615

17

108

13

 

Ligand sequence

TCGCGC20NGCT

4

1615

7

120

0

 

Batch of SELEX experiment

AA

5

9

17

1615

2

 

Seed sequence

AAAAGTCAA

6

3

107

26

1615

 

Hamming distance of sequences to seed

1

7

19

1615

0

41

 

SELEX cycle

4

8

1615

11

49

3

 

Number of repeats

monomeric

9

1615

248

213

427

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Nr2e1_d2

 

 

 

 

A

C

G

T

 

Name

Nr2e1

1

1537

181

659

51

 

TF group

nuclearreceptor

2

1753

262

545

267

 

Polypeptide used

DBD

3

262

16

3361

25

 

Ligand sequence

TCGCGC20NGCT

4

26

177

174

2564

 

Batch of SELEX experiment

AA

5

0

2564

39

241

 

Seed sequence

RAGTCAANAAGTCA

6

2046

11

194

41

 

Hamming distance of sequences to seed

2

7

1771

250

313

432

 

SELEX cycle

4

8

801

160

647

969

 

Number of repeats

dimeric

9

2072

22

65

112

 

Comment

 

10

2066

70

135

63

 

Representative matrix

yes

11

24

1

3479

3

 

 

 

12

0

351

82

2432

 

Source:

 

13

7

2542

71

248

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

2111

24

223

18