NFIX_d1

 

 

 

 

A

C

G

T

 

Name

NFIX

1

4793

34395

2449

37897

 

TF group

NFI

2

862

786

5251

76662

 

Polypeptide used

full

3

11

11

79856

17

 

Ligand sequence

TCAACC20NCG

4

690

10

80487

362

 

Batch of SELEX experiment

AC

5

14569

63932

1225

1111

 

Seed sequence

YTGGCNNNNTGCCAA

6

26565

12418

16425

17674

 

Hamming distance of sequences to seed

2

7

17051

23752

14384

18234

 

SELEX cycle

3

8

18549

18296

19335

18266

 

Number of repeats

dimeric

9

18400

13358

25034

18651

 

Comment

 

10

11044

7917

7372

66568

 

Representative matrix

no

11

874

881

83093

11389

 

 

 

12

223

66771

31

391

 

 

 

13

6

66848

1

16

 

Source:

 

14

67572

5319

980

734

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

58277

3734

13310

7772

 

 

 

 

 

 

 

 

 

 

 

 

NFIX_m1

 

 

 

 

A

C

G

T

 

Name

NFIX

1

7951

8810

8725

7378

 

TF group

NFI

2

7832

6134

10855

8043

 

Polypeptide used

full

3

11279

9695

5911

32864

 

Ligand sequence

TCAACC20NCG

4

132

186

32864

2539

 

Batch of SELEX experiment

AC

5

3

32864

3257

29

 

Seed sequence

NNTGCCAAN

6

0

32864

0

0

 

Hamming distance of sequences to seed

1

7

32864

2230

180

110

 

SELEX cycle

3

8

32864

1356

12688

2399

 

Number of repeats

monomeric

9

8251

9039

9135

6439

 

Comment

model generated using exact match to seed; dimeric binding is favored heavily over this monomer; removed from network representations

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

NFIX_m2

 

 

 

 

A

C

G

T

 

Name

NFIX

1

6749

5095

5573

6719

 

TF group

NFI

2

6904

3320

7121

6792

 

Polypeptide used

full

3

6464

4674

3171

24137

 

Ligand sequence

TGAGAT20NAGA

4

13

29

24137

2293

 

Batch of SELEX experiment

W

5

0

24137

4728

0

 

Seed sequence

NNTGCCAAN

6

0

24137

0

0

 

Hamming distance of sequences to seed

1

7

24137

1533

106

295

 

SELEX cycle

3

8

24137

1095

7380

3410

 

Number of repeats

monomeric

9

6007

5429

6068

6634

 

Comment

dimeric binding is favored heavily over this monomer; removed from network representations

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764