|
|
MYBL1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MYBL1 |
|
1 |
1280 |
68 |
618 |
267 |
|
TF group |
MYB |
|
2 |
204 |
1280 |
8 |
73 |
|
Polypeptide used |
DBD |
|
3 |
284 |
761 |
239 |
0 |
|
Ligand sequence |
TTGCGT20NTA |
|
4 |
27 |
0 |
1280 |
78 |
|
Batch of SELEX experiment |
AF |
|
5 |
21 |
0 |
0 |
1280 |
|
Seed sequence |
ACNGTTAAACNG |
|
6 |
59 |
79 |
0 |
1280 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1280 |
310 |
188 |
243 |
|
SELEX cycle |
4 |
|
8 |
1280 |
81 |
80 |
77 |
|
Number of repeats |
dimeric |
|
9 |
1280 |
55 |
79 |
130 |
|
Comment |
|
|
10 |
265 |
1280 |
56 |
103 |
|
Representative matrix |
yes |
|
11 |
21 |
422 |
449 |
388 |
|
Source: |
|
|
12 |
339 |
296 |
1280 |
229 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
MYBL1_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MYBL1 |
|
1 |
1591 |
25 |
391 |
201 |
|
TF group |
MYB |
|
2 |
347 |
2209 |
122 |
112 |
|
Polypeptide used |
DBD |
|
3 |
258 |
2209 |
266 |
0 |
|
Ligand sequence |
TTGCGT20NTA |
|
4 |
49 |
7 |
2209 |
4 |
|
Batch of SELEX experiment |
AF |
|
5 |
9 |
26 |
0 |
2209 |
|
Seed sequence |
NCCGTTAACGGN |
|
6 |
10 |
8 |
0 |
2209 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2209 |
0 |
12 |
14 |
|
SELEX cycle |
4 |
|
8 |
2209 |
18 |
24 |
0 |
|
Number of repeats |
dimeric |
|
9 |
14 |
2209 |
1 |
12 |
|
Comment |
|
|
10 |
164 |
1733 |
2209 |
945 |
|
Representative matrix |
yes |
|
11 |
493 |
362 |
2209 |
888 |
|
|
|
|
12 |
332 |
765 |
40 |
1072 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
MYBL1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MYBL1 |
|
1 |
4233 |
2322 |
2119 |
3740 |
|
TF group |
MYB |
|
2 |
4508 |
2958 |
1078 |
3870 |
|
Polypeptide used |
DBD |
|
3 |
12414 |
1015 |
5248 |
2376 |
|
Ligand sequence |
TTGCGT20NTA |
|
4 |
12414 |
375 |
2502 |
788 |
|
Batch of SELEX experiment |
AF |
|
5 |
262 |
12414 |
47 |
131 |
|
Seed sequence |
NNAACCGTTNN |
|
6 |
510 |
12414 |
0 |
191 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
0 |
12414 |
0 |
|
SELEX cycle |
4 |
|
8 |
21 |
706 |
42 |
12414 |
|
Number of repeats |
monomeric |
|
9 |
491 |
3268 |
240 |
12414 |
|
Comment |
|
|
10 |
7812 |
618 |
1756 |
2228 |
|
Representative matrix |
yes |
|
11 |
6297 |
2301 |
1556 |
2260 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
MYBL1_d3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MYBL1 |
|
1 |
150 |
32 |
1063 |
247 |
|
TF group |
MYB |
|
2 |
526 |
87 |
564 |
314 |
|
Polypeptide used |
DBD |
|
3 |
160 |
1491 |
110 |
144 |
|
Ligand sequence |
TTGCGT20NTA |
|
4 |
372 |
651 |
443 |
25 |
|
Batch of SELEX experiment |
AF |
|
5 |
50 |
34 |
1491 |
223 |
|
Seed sequence |
NNCNGTTNNNACNGTTN |
|
6 |
48 |
24 |
63 |
1491 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
56 |
79 |
29 |
1491 |
|
SELEX cycle |
4 |
|
8 |
865 |
16 |
285 |
325 |
|
Number of repeats |
dimeric |
|
9 |
524 |
144 |
278 |
546 |
|
Comment |
|
|
10 |
751 |
0 |
313 |
449 |
|
Representative matrix |
yes |
|
11 |
1491 |
86 |
551 |
440 |
|
|
|
|
12 |
75 |
1491 |
0 |
52 |
|
|
|
|
13 |
122 |
695 |
643 |
32 |
|
|
|
|
14 |
13 |
14 |
1491 |
6 |
|
|
|
|
15 |
8 |
115 |
62 |
1491 |
|
Source: |
|
|
16 |
115 |
161 |
77 |
1491 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
689 |
49 |
482 |
271 |
|
|
|