MSX2_d1

 

 

 

 

A

C

G

T

 

Name

MSX2

1

150

321

741

255

 

TF group

homeodomain

2

36

813

13

235

 

Polypeptide used

DBD

3

1090

51

36

40

 

Ligand sequence

TGCGGG20NGA

4

1108

34

16

4

 

Batch of SELEX experiment

W

5

0

1

0

1597

 

Seed sequence

NYAATTAAAANNYAATTA

6

103

102

4

1473

 

Hamming distance of sequences to seed

2

7

1145

6

33

26

 

SELEX cycle

3

8

1013

114

187

302

 

Number of repeats

dimeric

9

1000

229

195

192

 

Comment

 

10

912

153

219

618

 

Representative matrix

no

11

657

89

191

364

 

 

 

12

180

517

465

89

 

 

 

13

82

779

15

260

 

 

 

14

1086

54

169

9

 

 

 

15

1091

63

9

1

 

 

 

16

2

1

0

1495

 

Source:

 

17

14

45

2

1472

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

1159

6

67

39

 

 

 

 

 

 

 

 

 

 

 

 

MSX2_m1

 

 

 

 

A

C

G

T

 

Name

MSX2

1

517

1688

835

360

 

TF group

homeodomain

2

105

2592

44

807

 

Polypeptide used

DBD

3

3400

161

67

84

 

Ligand sequence

TGCGGG20NGA

4

3400

28

0

0

 

Batch of SELEX experiment

W

5

0

0

0

3400

 

Seed sequence

NYAATTAN

6

52

169

72

3400

 

Hamming distance of sequences to seed

1

7

3400

61

0

21

 

SELEX cycle

3

8

1198

791

892

518

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764