|
|
MAX_dd1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MAX |
|
1 |
44 |
2459 |
1 |
2 |
|
TF group |
bHLH |
|
2 |
2459 |
11 |
55 |
32 |
|
Polypeptide used |
DBD |
|
3 |
5 |
2459 |
12 |
142 |
|
Ligand sequence |
TGACCT20NGA |
|
4 |
198 |
12 |
2459 |
1 |
|
Batch of SELEX experiment |
Y |
|
5 |
40 |
134 |
1 |
2459 |
|
Seed sequence |
CACGTGNNNNNCACGTG |
|
6 |
7 |
5 |
2459 |
30 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
331 |
948 |
720 |
459 |
|
SELEX cycle |
3 |
|
8 |
549 |
779 |
307 |
822 |
|
Number of repeats |
dimer of dimers |
|
9 |
890 |
762 |
373 |
432 |
|
Comment |
|
|
10 |
994 |
533 |
537 |
395 |
|
Representative matrix |
yes |
|
11 |
792 |
802 |
539 |
326 |
|
|
|
|
12 |
22 |
2459 |
4 |
2 |
|
|
|
|
13 |
2459 |
5 |
59 |
30 |
|
|
|
|
14 |
2 |
2459 |
5 |
109 |
|
|
|
|
15 |
303 |
24 |
2459 |
4 |
|
Source: |
|
|
16 |
124 |
185 |
12 |
2459 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
17 |
4 |
2 |
2459 |
54 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
MAX_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MAX |
|
1 |
3307 |
1556 |
1295 |
719 |
|
TF group |
bHLH |
|
2 |
1915 |
2809 |
1514 |
637 |
|
Polypeptide used |
DBD |
|
3 |
39 |
6876 |
0 |
0 |
|
Ligand sequence |
TGACCT20NGA |
|
4 |
6876 |
0 |
87 |
38 |
|
Batch of SELEX experiment |
Y |
|
5 |
0 |
6876 |
7 |
229 |
|
Seed sequence |
NNCACGTGNN |
|
6 |
329 |
39 |
6876 |
19 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
69 |
159 |
20 |
6876 |
|
SELEX cycle |
2 |
|
8 |
0 |
27 |
6876 |
36 |
|
Number of repeats |
dimeric |
|
9 |
1341 |
2450 |
1638 |
1446 |
|
Comment |
|
|
10 |
1122 |
2225 |
986 |
2543 |
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|