|
|
MAFK_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MAFK |
|
1 |
10500 |
4127 |
5421 |
6097 |
|
TF group |
bZIP |
|
2 |
12120 |
1948 |
4101 |
7977 |
|
Polypeptide used |
DBD |
|
3 |
12304 |
1354 |
2156 |
10331 |
|
Ligand sequence |
TGCCTG30NTCC |
|
4 |
10771 |
1955 |
1925 |
11494 |
|
Batch of SELEX experiment |
AI |
|
5 |
7600 |
4235 |
5688 |
8622 |
|
Seed sequence |
NNNNNTGCTGAN |
|
6 |
1313 |
5170 |
1 |
26145 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
0 |
26145 |
0 |
|
SELEX cycle |
2 |
|
8 |
1603 |
26145 |
101 |
0 |
|
Number of repeats |
monomeric |
|
9 |
196 |
96 |
0 |
26145 |
|
Comment |
|
|
10 |
98 |
0 |
26145 |
2805 |
|
Representative matrix |
no |
|
11 |
26145 |
326 |
0 |
354 |
|
Source: |
|
|
12 |
1446 |
12446 |
7630 |
4623 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
MAFK_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MAFK |
|
1 |
1431 |
553 |
835 |
1068 |
|
TF group |
bZIP |
|
2 |
1590 |
459 |
595 |
1204 |
|
Polypeptide used |
DBD |
|
3 |
1383 |
603 |
596 |
1315 |
|
Ligand sequence |
TGCCTG30NTCC |
|
4 |
1187 |
669 |
922 |
1169 |
|
Batch of SELEX experiment |
AI |
|
5 |
584 |
1198 |
180 |
4094 |
|
Seed sequence |
NNNNTGCTGASTCAGCANNNN |
|
6 |
90 |
137 |
4442 |
30 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
474 |
3575 |
20 |
120 |
|
SELEX cycle |
2 |
|
8 |
488 |
514 |
233 |
4322 |
|
Number of repeats |
dimeric |
|
9 |
448 |
224 |
4201 |
992 |
|
Comment |
|
|
10 |
3108 |
377 |
149 |
299 |
|
Representative
matrix |
no |
|
11 |
607 |
2146 |
1511 |
692 |
|
|
|
|
12 |
584 |
249 |
508 |
4189 |
|
|
|
|
13 |
1030 |
3334 |
251 |
432 |
|
|
|
|
14 |
3190 |
208 |
411 |
485 |
|
|
|
|
15 |
209 |
26 |
4210 |
648 |
|
|
|
|
16 |
38 |
3611 |
140 |
91 |
|
|
|
|
17 |
2978 |
234 |
1148 |
544 |
|
|
|
|
18 |
1064 |
860 |
740 |
1290 |
|
|
|
|
19 |
1323 |
543 |
607 |
1491 |
|
Source: |
|
|
20 |
1299 |
523 |
446 |
1735 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
21 |
1045 |
819 |
522 |
1628 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
MAFK_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MAFK |
|
1 |
4881 |
1573 |
1789 |
1847 |
|
TF group |
bZIP |
|
2 |
5222 |
588 |
1850 |
2430 |
|
Polypeptide used |
full |
|
3 |
5205 |
328 |
733 |
3824 |
|
Ligand sequence |
TTAAAG20NTA |
|
4 |
4473 |
784 |
731 |
4102 |
|
Batch of SELEX experiment |
AE |
|
5 |
3482 |
952 |
1906 |
3750 |
|
Seed sequence |
NNNNNTGCTGAN |
|
6 |
586 |
2241 |
91 |
10090 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
15 |
10090 |
13 |
|
SELEX cycle |
3 |
|
8 |
758 |
10090 |
0 |
79 |
|
Number of repeats |
monomeric |
|
9 |
187 |
190 |
0 |
10090 |
|
Comment |
|
|
10 |
257 |
22 |
10090 |
1561 |
|
Representative matrix |
no |
|
11 |
10090 |
294 |
0 |
260 |
|
Source: |
|
|
12 |
285 |
5081 |
3258 |
1466 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
MAFK_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
MAFK |
|
1 |
1558 |
509 |
1042 |
1069 |
|
TF group |
bZIP |
|
2 |
423 |
107 |
135 |
4263 |
|
Polypeptide used |
full |
|
3 |
49 |
91 |
5654 |
13 |
|
Ligand sequence |
TTAAAG20NTA |
|
4 |
465 |
3603 |
17 |
89 |
|
Batch of SELEX experiment |
AE |
|
5 |
736 |
482 |
209 |
4446 |
|
Seed sequence |
NTGCTGANTCAGCRN |
|
6 |
664 |
458 |
4945 |
972 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
3781 |
209 |
61 |
266 |
|
SELEX cycle |
3 |
|
8 |
584 |
1366 |
1732 |
827 |
|
Number of repeats |
dimeric |
|
9 |
309 |
60 |
506 |
4328 |
|
Comment |
|
|
10 |
888 |
3647 |
189 |
298 |
|
Representative
matrix |
no |
|
11 |
3737 |
147 |
473 |
646 |
|
|
|
|
12 |
169 |
7 |
4876 |
734 |
|
|
|
|
13 |
11 |
3913 |
164 |
107 |
|
Source: |
|
|
14 |
1923 |
82 |
1939 |
287 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
1373 |
758 |
881 |
1281 |
|
|
|