LHX6_m1

 

 

 

 

A

C

G

T

 

Name

LHX6

1

1857

769

1548

264

 

TF group

homeodomain

2

529

3015

791

1422

 

Polypeptide used

full

3

0

253

28

4438

 

Ligand sequence

TCGGGG20NGGT

4

4438

90

487

0

 

Batch of SELEX experiment

AF

5

4438

14

0

0

 

Seed sequence

NYTAATTARN

6

0

98

15

4438

 

Hamming distance of sequences to seed

1

7

0

766

108

4438

 

SELEX cycle

4

8

4438

0

243

2

 

Number of repeats

monomeric

9

1668

637

2769

194

 

Comment

 

10

548

1654

728

1507

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

LHX6_d1

 

 

 

 

A

C

G

T

 

Name

LHX6

1

15

469

5

2675

 

TF group

homeodomain

2

2564

68

408

22

 

Polypeptide used

full

3

2661

5

5

5

 

Ligand sequence

TCGGGG20NGGT

4

0

3

21

2986

 

Batch of SELEX experiment

AF

5

0

151

29

2910

 

Seed sequence

TAATTAGYRYTRATTA

6

2692

4

216

0

 

Hamming distance of sequences to seed

2

7

264

452

3382

157

 

SELEX cycle

4

8

236

1755

343

1377

 

Number of repeats

dimeric

9

933

401

2213

84

 

Comment

 

10

57

1591

277

1461

 

Representative matrix

yes

11

1

40

6

2923

 

 

 

12

1571

19

1442

11

 

 

 

13

2760

23

3

0

 

 

 

14

0

54

5

2874

 

Source:

 

15

15

147

122

2766

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

2167

11

844

2

 

 

 

 

 

 

 

 

 

 

 

 

LHX6_d2

 

 

 

 

A

C

G

T

 

Name

LHX6

1

25

36

21

2024

 

TF group

homeodomain

2

578

14

1503

7

 

Polypeptide used

full

3

1368

43

78

0

 

Ligand sequence

TCGGGG20NGGT

4

0

55

62

2101

 

Batch of SELEX experiment

AF

5

0

54

79

2063

 

Seed sequence

YRATTGCAATYR

6

33

27

2595

9

 

Hamming distance of sequences to seed

2

7

0

2104

23

128

 

SELEX cycle

4

8

1414

41

70

0

 

Number of repeats

dimeric

9

1418

65

124

10

 

Comment

 

10

0

98

0

2023

 

Representative matrix

yes

11

0

1200

31

879

 

Source:

 

12

1390

25

12

10

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764