|
|
HSF1_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HSF1 |
|
1 |
764 |
263 |
348 |
3716 |
|
TF group |
HSF |
|
2 |
331 |
74 |
373 |
3716 |
|
Polypeptide used |
DBD |
|
3 |
58 |
3716 |
71 |
12 |
|
Ligand sequence |
TATAGA20NGAG |
|
4 |
80 |
1617 |
1446 |
3716 |
|
Batch of SELEX experiment |
Y |
|
5 |
3716 |
1592 |
1617 |
50 |
|
Seed sequence |
TTCTAGAANNTTC |
|
6 |
1 |
7 |
3716 |
3 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3716 |
226 |
30 |
195 |
|
SELEX cycle |
3 |
|
8 |
3716 |
115 |
103 |
350 |
|
Number of repeats |
trimeric |
|
9 |
392 |
1621 |
617 |
1086 |
|
Comment |
|
|
10 |
1062 |
665 |
1421 |
568 |
|
Representative matrix |
yes |
|
11 |
533 |
208 |
237 |
3716 |
|
|
|
|
12 |
371 |
205 |
288 |
3716 |
|
Source: |
|
|
13 |
248 |
3716 |
252 |
208 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
HSF1_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
HSF1 |
|
1 |
64 |
18 |
25 |
1455 |
|
TF group |
HSF |
|
2 |
11 |
4 |
17 |
1455 |
|
Polypeptide used |
full |
|
3 |
9 |
1455 |
9 |
5 |
|
Ligand sequence |
TACCAC20NACC |
|
4 |
4 |
361 |
238 |
1455 |
|
Batch of SELEX experiment |
AA |
|
5 |
1455 |
424 |
384 |
3 |
|
Seed sequence |
TTCTAGAANNTTC |
|
6 |
0 |
0 |
1455 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1455 |
8 |
2 |
7 |
|
SELEX cycle |
3 |
|
8 |
1455 |
4 |
4 |
27 |
|
Number of repeats |
trimeric |
|
9 |
70 |
713 |
159 |
515 |
|
Comment |
|
|
10 |
490 |
190 |
592 |
183 |
|
Representative
matrix |
no |
|
11 |
25 |
5 |
0 |
1455 |
|
|
|
|
12 |
6 |
2 |
4 |
1455 |
|
Source: |
|
|
13 |
3 |
1455 |
3 |
4 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|