GRHL1_dd1

 

 

 

 

A

C

G

T

 

Name

GRHL1

1

2101

142

950

464

 

TF group

CP2

2

2238

99

160

239

 

Polypeptide used

DBD

3

0

1828

122

5

 

Ligand sequence

TCCAAC20NTA

4

157

1824

237

599

 

Batch of SELEX experiment

Q

5

555

402

2797

927

 

Seed sequence

AACCGGWNNNWCCGGTT

6

26

24

3717

0

 

Hamming distance of sequences to seed

2

7

763

274

103

2296

 

SELEX cycle

3

8

520

675

137

1226

 

Number of repeats

dimer of dimers

9

565

451

406

1376

 

Comment

 

10

1455

164

390

637

 

Representative matrix

yes

11

1776

67

199

750

 

 

 

12

2

1774

0

1

 

 

 

13

492

1728

263

344

 

 

 

14

678

137

3549

368

 

 

 

15

0

91

3812

4

 

Source:

 

16

389

130

53

3316

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

201

581

171

2896

 

 

 

 

 

 

 

 

 

 

 

 

GRHL1_d1

 

 

 

 

A

C

G

T

 

Name

GRHL1

1

8451

1887

2358

2416

 

TF group

CP2

2

15112

288

1444

960

 

Polypeptide used

DBD

3

15112

77

215

662

 

Ligand sequence

TCCAAC20NTA

4

8

15112

0

6

 

Batch of SELEX experiment

Q

5

1223

15112

161

771

 

Seed sequence

NAACCGGTTN

6

1735

541

15112

1291

 

Hamming distance of sequences to seed

1

7

3

0

15112

5

 

SELEX cycle

3

8

1498

336

60

15112

 

Number of repeats

dimeric

9

827

2961

124

15112

 

Comment

 

10

2249

4766

1135

6962

 

Representative matrix

yes

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

GRHL1_d2

 

 

 

 

A

C

G

T

 

Name

GRHL1

1

1345

472

247

427

 

TF group

CP2

2

2491

109

409

418

 

Polypeptide used

full

3

2491

3

112

62

 

Ligand sequence

TGGACA20NCAT

4

2491

1

7

28

 

Batch of SELEX experiment

W

5

0

2491

0

0

 

Seed sequence

NAAACCGGTTTN

6

371

2491

51

221

 

Hamming distance of sequences to seed

1

7

332

52

2491

200

 

SELEX cycle

3

8

0

1

2491

0

 

Number of repeats

dimeric

9

76

4

2

2491

 

Comment

 

10

127

186

12

2491

 

Representative matrix

no

11

761

537

244

2491

 

Source:

 

12

685

289

655

862

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764