GBX2_m1

 

 

 

 

A

C

G

T

 

Name

GBX2

1

10334

5147

8145

3740

 

TF group

homeodomain

2

3761

10517

8429

4658

 

Polypeptide used

DBD

3

699

15511

106

11855

 

Ligand sequence

TCCCGA20NGCC

4

27366

570

1113

227

 

Batch of SELEX experiment

Y

5

27366

250

114

25

 

Seed sequence

NNYAATTANN

6

0

61

65

27366

 

Hamming distance of sequences to seed

1

7

318

570

673

27366

 

SELEX cycle

3

8

27366

73

30

650

 

Number of repeats

monomeric

9

8236

4502

10638

3991

 

Comment

 

10

5389

9159

7075

5743

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

GBX2_d1

 

 

 

 

A

C

G

T

 

Name

GBX2

1

225

584

37

5645

 

TF group

homeodomain

2

4062

110

234

1771

 

Polypeptide used

DBD

3

4146

90

261

101

 

Ligand sequence

TCCCGA20NGCC

4

415

443

862

5871

 

Batch of SELEX experiment

Y

5

549

263

645

5723

 

Seed sequence

TAATTRNNYAATTA

6

1178

112

4797

108

 

Hamming distance of sequences to seed

2

7

1395

1302

2737

350

 

SELEX cycle

3

8

390

2943

1604

1239

 

Number of repeats

dimeric

9

200

4747

268

1462

 

Comment

 

10

4154

456

402

418

 

Representative matrix

no

11

4245

598

454

304

 

 

 

12

142

355

121

5780

 

Source:

 

13

1244

138

141

5484

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

4309

23

307

223

 

 

 

 

 

 

 

 

 

 

 

 

GBX2_m2

 

 

 

 

A

C

G

T

 

Name

GBX2

1

921

786

766

531

 

TF group

homeodomain

2

574

1218

707

505

 

Polypeptide used

full

3

194

1893

93

1110

 

Ligand sequence

TGATTT20NGA

4

3003

435

311

165

 

Batch of SELEX experiment

AE

5

3003

212

57

144

 

Seed sequence

NNYAATTANN

6

68

0

26

3003

 

Hamming distance of sequences to seed

1

7

158

345

222

3003

 

SELEX cycle

2

8

3003

77

88

272

 

Number of repeats

monomeric

9

870

727

928

478

 

Comment

 

10

610

1147

683

563

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Gbx2_m3

 

 

 

 

A

C

G

T

 

Name

Gbx2

1

1996

837

1247

697

 

TF group

homeodomain

2

761

1793

1392

830

 

Polypeptide used

DBD

3

219

2701

61

2076

 

Ligand sequence

TACACC20NCAC

4

4776

328

233

67

 

Batch of SELEX experiment

Z

5

4776

175

0

131

 

Seed sequence

NNYAATTANN

6

0

0

0

4776

 

Hamming distance of sequences to seed

1

7

101

178

155

4776

 

SELEX cycle

3

8

4776

39

4

185

 

Number of repeats

monomeric

9

1426

913

1679

759

 

Comment

 

10

914

1440

1261

1161

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764