FOXD2_d1

 

 

 

 

A

C

G

T

 

Name

FOXD2

1

631

316

255

388

 

TF group

forkhead

2

921

205

668

27

 

Polypeptide used

DBD

3

606

364

49

571

 

Ligand sequence

TGCTCG20NCTC

4

839

52

14

750

 

Batch of SELEX experiment

Z

5

1589

29

17

93

 

Seed sequence

NRNWAAYRTTKNYN

6

1589

25

13

171

 

Hamming distance of sequences to seed

1

7

14

493

0

1096

 

SELEX cycle

2

8

1173

0

417

0

 

Number of repeats

dimeric

9

65

0

16

1589

 

Comment

 

10

64

15

69

1589

 

Representative matrix

no

11

192

0

530

1060

 

 

 

12

1087

64

225

213

 

Source:

 

13

34

899

134

691

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

505

286

239

560

 

 

 

 

 

 

 

 

 

 

 

 

FOXD2_m1

 

 

 

 

A

C

G

T

 

Name

FOXD2

1

605

53

1261

30

 

TF group

forkhead

2

261

384

0

1866

 

Polypeptide used

DBD

3

1866

281

0

120

 

Ligand sequence

TGCTCG20NCTC

4

1866

59

20

32

 

Batch of SELEX experiment

Z

5

1866

0

0

35

 

Seed sequence

RTAAAYA

6

0

1361

28

505

 

Hamming distance of sequences to seed

1

7

1866

0

223

176

 

SELEX cycle

2

 

 

 

 

 

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764