|
|
FOXB1_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXB1 |
|
1 |
143 |
88 |
704 |
147 |
|
TF group |
forkhead |
|
2 |
500 |
53 |
63 |
41 |
|
Polypeptide used |
DBD |
|
3 |
524 |
4 |
18 |
25 |
|
Ligand sequence |
TGAGCA30NCGA |
|
4 |
0 |
13 |
5 |
786 |
|
Batch of SELEX experiment |
AI |
|
5 |
27 |
0 |
849 |
11 |
|
Seed sequence |
GAATGACACRGCGN |
|
6 |
533 |
12 |
10 |
5 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
17 |
682 |
0 |
79 |
|
SELEX cycle |
3 |
|
8 |
540 |
2 |
14 |
0 |
|
Number of repeats |
putative multimer |
|
9 |
4 |
675 |
11 |
5 |
|
Comment |
|
|
10 |
350 |
47 |
258 |
34 |
|
Representative matrix |
yes |
|
11 |
101 |
18 |
791 |
29 |
|
|
|
|
12 |
104 |
603 |
91 |
58 |
|
Source: |
|
|
13 |
106 |
61 |
705 |
191 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
351 |
123 |
87 |
60 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
FOXB1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXB1 |
|
1 |
1320 |
324 |
161 |
1836 |
|
TF group |
forkhead |
|
2 |
2012 |
221 |
750 |
363 |
|
Polypeptide used |
DBD |
|
3 |
968 |
272 |
487 |
2148 |
|
Ligand sequence |
TGAGCA30NCGA |
|
4 |
552 |
98 |
3632 |
109 |
|
Batch of SELEX experiment |
AI |
|
5 |
42 |
399 |
14 |
3538 |
|
Seed sequence |
WNWGTMAATATTRACWNW |
|
6 |
2351 |
937 |
7 |
8 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
3081 |
132 |
4 |
22 |
|
SELEX cycle |
3 |
|
8 |
3101 |
21 |
15 |
61 |
|
Number of repeats |
dimeric |
|
9 |
6 |
147 |
9 |
3605 |
|
Comment |
|
|
10 |
3106 |
8 |
101 |
3 |
|
Representative
matrix |
no |
|
11 |
83 |
12 |
32 |
3607 |
|
|
|
|
12 |
84 |
15 |
61 |
3589 |
|
|
|
|
13 |
196 |
13 |
3249 |
1314 |
|
|
|
|
14 |
3076 |
37 |
212 |
86 |
|
|
|
|
15 |
167 |
3189 |
118 |
855 |
|
|
|
|
16 |
2327 |
242 |
217 |
822 |
|
Source: |
|
|
17 |
464 |
963 |
213 |
1843 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
18 |
1843 |
225 |
335 |
1184 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
FOXB1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXB1 |
|
1 |
2393 |
272 |
190 |
4448 |
|
TF group |
forkhead |
|
2 |
5343 |
263 |
1498 |
561 |
|
Polypeptide used |
DBD |
|
3 |
1983 |
218 |
409 |
4858 |
|
Ligand sequence |
TGAGCA30NCGA |
|
4 |
1159 |
54 |
6841 |
124 |
|
Batch of SELEX experiment |
AI |
|
5 |
180 |
240 |
113 |
6841 |
|
Seed sequence |
WRWGTMAAYAN |
|
6 |
4891 |
1950 |
75 |
73 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
6841 |
213 |
0 |
381 |
|
SELEX cycle |
3 |
|
8 |
6841 |
47 |
47 |
216 |
|
Number of repeats |
monomeric |
|
9 |
28 |
2252 |
104 |
4589 |
|
Comment |
|
|
10 |
6841 |
0 |
157 |
147 |
|
Representative matrix |
yes |
|
11 |
1704 |
573 |
556 |
4008 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
FOXB1_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FOXB1 |
|
1 |
199 |
0 |
44 |
468 |
|
TF group |
forkhead |
|
2 |
26 |
17 |
667 |
2 |
|
Polypeptide used |
full |
|
3 |
0 |
7 |
4 |
667 |
|
Ligand sequence |
TCTGGT20NGGG |
|
4 |
667 |
89 |
19 |
5 |
|
Batch of SELEX experiment |
AE |
|
5 |
667 |
36 |
21 |
16 |
|
Seed sequence |
WGTAAAYAN |
|
6 |
667 |
9 |
21 |
4 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
21 |
428 |
13 |
240 |
|
SELEX cycle |
4 |
|
8 |
667 |
4 |
0 |
19 |
|
Number of repeats |
monomeric |
|
9 |
249 |
97 |
121 |
201 |
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|