|
|
FLI1_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FLI1 |
|
1 |
16353 |
1599 |
4546 |
2612 |
|
TF group |
ETS |
|
2 |
1755 |
16353 |
1746 |
334 |
|
Polypeptide used |
DBD |
|
3 |
1875 |
16353 |
96 |
2 |
|
Ligand sequence |
TCTAAT20NCG |
|
4 |
0 |
0 |
16353 |
0 |
|
Batch of SELEX experiment |
V |
|
5 |
0 |
17 |
16353 |
20 |
|
Seed sequence |
ACCGGAARYN |
|
6 |
16353 |
14 |
1 |
9 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
16353 |
643 |
24 |
5229 |
|
SELEX cycle |
2 |
|
8 |
7736 |
459 |
8617 |
160 |
|
Number of repeats |
monomeric |
|
9 |
576 |
5166 |
1117 |
11187 |
|
Comment |
|
|
10 |
3460 |
4618 |
5875 |
2400 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
FLI1_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FLI1 |
|
1 |
4050 |
411 |
823 |
547 |
|
TF group |
ETS |
|
2 |
686 |
4050 |
631 |
135 |
|
Polypeptide used |
DBD |
|
3 |
591 |
4050 |
24 |
2 |
|
Ligand sequence |
TCTAAT20NCG |
|
4 |
0 |
0 |
4050 |
0 |
|
Batch of SELEX experiment |
V |
|
5 |
2 |
3 |
4050 |
0 |
|
Seed sequence |
ACCGGAWATCCGGN |
|
6 |
4050 |
4 |
1 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2075 |
518 |
1 |
1975 |
|
SELEX cycle |
3 |
|
8 |
4050 |
0 |
694 |
526 |
|
Number of repeats |
monomeric |
|
9 |
2 |
12 |
2 |
4050 |
|
Comment |
|
|
10 |
26 |
4050 |
52 |
10 |
|
Representative
matrix |
no |
|
11 |
16 |
4050 |
9 |
4 |
|
|
|
|
12 |
5 |
65 |
4050 |
901 |
|
Source: |
|
|
13 |
433 |
1573 |
4050 |
976 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
868 |
1311 |
553 |
1317 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
FLI1_3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FLI1 |
|
1 |
43586 |
1460 |
5132 |
4483 |
|
TF group |
ETS |
|
2 |
2926 |
43586 |
1858 |
292 |
|
Polypeptide used |
full |
|
3 |
2806 |
43586 |
90 |
0 |
|
Ligand sequence |
TAGGAT20NAGT |
|
4 |
5 |
0 |
43586 |
2 |
|
Batch of SELEX experiment |
AC |
|
5 |
0 |
0 |
43586 |
60 |
|
Seed sequence |
ACCGGAARYN |
|
6 |
43586 |
21 |
19 |
11 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
43586 |
230 |
24 |
6065 |
|
SELEX cycle |
3 |
|
8 |
19102 |
563 |
24484 |
83 |
|
Number of repeats |
monomeric |
|
9 |
897 |
11173 |
1986 |
32413 |
|
Comment |
|
|
10 |
10642 |
7716 |
18560 |
6668 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
FLI1_4 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
FLI1 |
|
1 |
3613 |
294 |
1211 |
772 |
|
TF group |
ETS |
|
2 |
417 |
3613 |
227 |
28 |
|
Polypeptide used |
full |
|
3 |
302 |
3613 |
0 |
0 |
|
Ligand sequence |
TAGGAT20NAGT |
|
4 |
3 |
3 |
3613 |
3 |
|
Batch of SELEX experiment |
AC |
|
5 |
0 |
0 |
3613 |
0 |
|
Seed sequence |
ACCGGAWATCCGGT |
|
6 |
3613 |
2 |
0 |
3 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2457 |
158 |
0 |
1156 |
|
SELEX cycle |
4 |
|
8 |
3613 |
3 |
306 |
11 |
|
Number of repeats |
monomeric |
|
9 |
2 |
3 |
0 |
3613 |
|
Comment |
|
|
10 |
0 |
3613 |
38 |
0 |
|
Representative
matrix |
no |
|
11 |
14 |
3613 |
13 |
0 |
|
|
|
|
12 |
2 |
16 |
3613 |
188 |
|
Source: |
|
|
13 |
154 |
221 |
3613 |
282 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
1009 |
1341 |
286 |
3613 |
|
|
|