ESRRA_m1

 

 

 

 

A

C

G

T

 

Name

ESRRA

1

13817

25478

23417

28945

 

TF group

nuclearreceptor

2

8909

26086

10882

61566

 

Polypeptide used

DBD

3

9306

80331

29345

2064

 

Ligand sequence

TGACGA30NGCA

4

87963

83

5610

169

 

Batch of SELEX experiment

AI

5

87966

206

280

0

 

Seed sequence

NTCAAGGTCAN

6

0

0

95346

1054

 

Hamming distance of sequences to seed

2

7

0

0

95804

0

 

SELEX cycle

4

8

3262

124

3124

83136

 

Number of repeats

monomeric

9

0

97593

1580

3863

 

Comment

 

10

84953

153

8416

7

 

Representative matrix

no

11

25914

21974

5983

35987

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

ESRRA_d1

 

 

 

 

A

C

G

T

 

Name

ESRRA

1

5090

40

400

77

 

TF group

nuclearreceptor

2

5450

59

117

40

 

Polypeptide used

DBD

3

110

181

5849

146

 

Ligand sequence

TGACGA30NGCA

4

16

36

5800

31

 

Batch of SELEX experiment

AI

5

247

51

646

4771

 

Seed sequence

RAGGTCANTCAAGGTCA

6

41

6144

123

572

 

Hamming distance of sequences to seed

2

7

4930

44

1441

362

 

SELEX cycle

4

8

1255

706

416

2928

 

Number of repeats

dimeric

9

1532

1661

854

3565

 

Comment

 

10

373

6006

895

304

 

Representative matrix

yes

11

5566

5

91

17

 

 

 

12

5621

9

25

1

 

 

 

13

9

3

5673

158

 

 

 

14

1

3

5709

30

 

 

 

15

311

16

584

4952

 

Source:

 

16

6

6079

122

556

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

5553

18

517

40

 

 

 

 

 

 

 

 

 

 

 

 

ESRRA_d2

 

 

 

 

A

C

G

T

 

Name

ESRRA

1

2551

15116

7045

1124

 

TF group

nuclearreceptor

2

20301

97

2332

620

 

Polypeptide used

DBD

3

21186

96

564

12

 

Ligand sequence

TGACGA30NGCA

4

310

90

22192

1395

 

Batch of SELEX experiment

AI

5

64

44

23030

30

 

Seed sequence

SAAGGTCANNTSAAGGTCA

6

1504

145

1919

20065

 

Hamming distance of sequences to seed

2

7

33

23593

1403

1990

 

SELEX cycle

4

8

19833

156

4643

375

 

Number of repeats

dimeric

9

6121

6691

2236

7452

 

Comment

 

10

6302

5663

3200

7019

 

Representative matrix

yes

11

1602

8111

3149

16183

 

 

 

12

1442

13760

9401

826

 

 

 

13

20884

57

1526

768

 

 

 

14

21772

123

332

10

 

 

 

15

167

21

21822

1169

 

 

 

16

57

84

22617

42

 

 

 

17

1822

93

2518

19605

 

Source:

 

18

32

23628

735

2726

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

20894

89

5241

231

 

 

 

 

 

 

 

 

 

 

 

 

Esrra_d3

 

 

 

 

A

C

G

T

 

Name

Esrra

1

222

0

231

314

 

TF group

nuclearreceptor

2

728

0

25

0

 

Polypeptide used

DBD

3

0

0

862

2

 

Ligand sequence

TAGCTC20NCG

4

0

3

850

18

 

Batch of SELEX experiment

AC

5

160

0

6

785

 

Seed sequence

RAGGTCANTCAAGGTCA

6

0

782

45

408

 

Hamming distance of sequences to seed

2

7

788

0

115

0

 

SELEX cycle

4

8

4

96

365

347

 

Number of repeats

dimeric

9

5

128

21

773

 

Comment

 

10

220

709

66

0

 

Representative matrix

yes

11

779

0

0

0

 

 

 

12

778

0

5

0

 

 

 

13

0

0

880

3

 

 

 

14

6

0

879

0

 

 

 

15

5

1

0

779

 

Source:

 

16

0

876

4

126

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

792

21

64

0

 

 

 

 

 

 

 

 

 

 

 

 

Esrra_m2

 

 

 

 

A

C

G

T

 

Name

Esrra

1

110

696

1482

4775

 

TF group

nuclearreceptor

2

131

339

57

4775

 

Polypeptide used

DBD

3

33

4775

404

4

 

Ligand sequence

TAGCTC20NCG

4

4775

0

4

0

 

Batch of SELEX experiment

AC

5

4775

0

4

0

 

Seed sequence

TTCAAGGTCAN

6

1

3

4775

9

 

Hamming distance of sequences to seed

1

7

0

2

4775

3

 

SELEX cycle

4

8

6

11

52

4775

 

Number of repeats

monomeric

9

0

4775

211

42

 

Comment

 

10

4775

6

293

2

 

Representative matrix

yes

11

739

350

55

3630

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764