|
ESRRA_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ESRRA |
1 |
13817 |
25478 |
23417 |
28945 |
|
TF group |
nuclearreceptor |
2 |
8909 |
26086 |
10882 |
61566 |
|
Polypeptide used |
DBD |
3 |
9306 |
80331 |
29345 |
2064 |
|
Ligand sequence |
TGACGA30NGCA |
4 |
87963 |
83 |
5610 |
169 |
|
Batch of SELEX experiment |
AI |
5 |
87966 |
206 |
280 |
0 |
|
Seed sequence |
NTCAAGGTCAN |
6 |
0 |
0 |
95346 |
1054 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
0 |
95804 |
0 |
|
SELEX cycle |
4 |
8 |
3262 |
124 |
3124 |
83136 |
|
Number of repeats |
monomeric |
9 |
0 |
97593 |
1580 |
3863 |
|
Comment |
|
10 |
84953 |
153 |
8416 |
7 |
|
Representative matrix |
no |
11 |
25914 |
21974 |
5983 |
35987 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ESRRA_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ESRRA |
1 |
5090 |
40 |
400 |
77 |
|
TF group |
nuclearreceptor |
2 |
5450 |
59 |
117 |
40 |
|
Polypeptide used |
DBD |
3 |
110 |
181 |
5849 |
146 |
|
Ligand sequence |
TGACGA30NGCA |
4 |
16 |
36 |
5800 |
31 |
|
Batch of SELEX experiment |
AI |
5 |
247 |
51 |
646 |
4771 |
|
Seed sequence |
RAGGTCANTCAAGGTCA |
6 |
41 |
6144 |
123 |
572 |
|
Hamming distance of sequences to seed |
2 |
7 |
4930 |
44 |
1441 |
362 |
|
SELEX cycle |
4 |
8 |
1255 |
706 |
416 |
2928 |
|
Number of repeats |
dimeric |
9 |
1532 |
1661 |
854 |
3565 |
|
Comment |
|
10 |
373 |
6006 |
895 |
304 |
|
Representative matrix |
yes |
11 |
5566 |
5 |
91 |
17 |
|
|
|
12 |
5621 |
9 |
25 |
1 |
|
|
|
13 |
9 |
3 |
5673 |
158 |
|
|
|
14 |
1 |
3 |
5709 |
30 |
|
|
|
15 |
311 |
16 |
584 |
4952 |
|
Source: |
|
16 |
6 |
6079 |
122 |
556 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
5553 |
18 |
517 |
40 |
|
|
|
|
|
|
|
|
|
|
|
|
ESRRA_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ESRRA |
1 |
2551 |
15116 |
7045 |
1124 |
|
TF group |
nuclearreceptor |
2 |
20301 |
97 |
2332 |
620 |
|
Polypeptide used |
DBD |
3 |
21186 |
96 |
564 |
12 |
|
Ligand sequence |
TGACGA30NGCA |
4 |
310 |
90 |
22192 |
1395 |
|
Batch of SELEX experiment |
AI |
5 |
64 |
44 |
23030 |
30 |
|
Seed sequence |
SAAGGTCANNTSAAGGTCA |
6 |
1504 |
145 |
1919 |
20065 |
|
Hamming distance of sequences to seed |
2 |
7 |
33 |
23593 |
1403 |
1990 |
|
SELEX cycle |
4 |
8 |
19833 |
156 |
4643 |
375 |
|
Number of repeats |
dimeric |
9 |
6121 |
6691 |
2236 |
7452 |
|
Comment |
|
10 |
6302 |
5663 |
3200 |
7019 |
|
Representative matrix |
yes |
11 |
1602 |
8111 |
3149 |
16183 |
|
|
|
12 |
1442 |
13760 |
9401 |
826 |
|
|
|
13 |
20884 |
57 |
1526 |
768 |
|
|
|
14 |
21772 |
123 |
332 |
10 |
|
|
|
15 |
167 |
21 |
21822 |
1169 |
|
|
|
16 |
57 |
84 |
22617 |
42 |
|
|
|
17 |
1822 |
93 |
2518 |
19605 |
|
Source: |
|
18 |
32 |
23628 |
735 |
2726 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
19 |
20894 |
89 |
5241 |
231 |
|
|
|
|
|
|
|
|
|
|
|
|
Esrra_d3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Esrra |
1 |
222 |
0 |
231 |
314 |
|
TF group |
nuclearreceptor |
2 |
728 |
0 |
25 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
0 |
862 |
2 |
|
Ligand sequence |
TAGCTC20NCG |
4 |
0 |
3 |
850 |
18 |
|
Batch of SELEX experiment |
AC |
5 |
160 |
0 |
6 |
785 |
|
Seed sequence |
RAGGTCANTCAAGGTCA |
6 |
0 |
782 |
45 |
408 |
|
Hamming distance of sequences to seed |
2 |
7 |
788 |
0 |
115 |
0 |
|
SELEX cycle |
4 |
8 |
4 |
96 |
365 |
347 |
|
Number of repeats |
dimeric |
9 |
5 |
128 |
21 |
773 |
|
Comment |
|
10 |
220 |
709 |
66 |
0 |
|
Representative matrix |
yes |
11 |
779 |
0 |
0 |
0 |
|
|
|
12 |
778 |
0 |
5 |
0 |
|
|
|
13 |
0 |
0 |
880 |
3 |
|
|
|
14 |
6 |
0 |
879 |
0 |
|
|
|
15 |
5 |
1 |
0 |
779 |
|
Source: |
|
16 |
0 |
876 |
4 |
126 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
792 |
21 |
64 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
Esrra_m2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Esrra |
1 |
110 |
696 |
1482 |
4775 |
|
TF group |
nuclearreceptor |
2 |
131 |
339 |
57 |
4775 |
|
Polypeptide used |
DBD |
3 |
33 |
4775 |
404 |
4 |
|
Ligand sequence |
TAGCTC20NCG |
4 |
4775 |
0 |
4 |
0 |
|
Batch of SELEX experiment |
AC |
5 |
4775 |
0 |
4 |
0 |
|
Seed sequence |
TTCAAGGTCAN |
6 |
1 |
3 |
4775 |
9 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
2 |
4775 |
3 |
|
SELEX cycle |
4 |
8 |
6 |
11 |
52 |
4775 |
|
Number of repeats |
monomeric |
9 |
0 |
4775 |
211 |
42 |
|
Comment |
|
10 |
4775 |
6 |
293 |
2 |
|
Representative
matrix |
yes |
11 |
739 |
350 |
55 |
3630 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |