|
|
ERG_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ERG |
|
1 |
4566 |
268 |
848 |
928 |
|
TF group |
ETS |
|
2 |
646 |
4566 |
398 |
97 |
|
Polypeptide used |
DBD |
|
3 |
635 |
4566 |
22 |
6 |
|
Ligand sequence |
TCTACA20NCAG |
|
4 |
1 |
0 |
4566 |
0 |
|
Batch of SELEX experiment |
AG |
|
5 |
0 |
1 |
4566 |
29 |
|
Seed sequence |
ACCGGAARTN |
|
6 |
4566 |
20 |
0 |
7 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
4566 |
119 |
7 |
1245 |
|
SELEX cycle |
2 |
|
8 |
1990 |
100 |
2576 |
28 |
|
Number of repeats |
monomeric |
|
9 |
137 |
1586 |
355 |
4566 |
|
Comment |
|
|
10 |
1006 |
1100 |
1668 |
792 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
ERG_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ERG |
|
1 |
2846 |
420 |
952 |
660 |
|
TF group |
ETS |
|
2 |
1236 |
4878 |
878 |
184 |
|
Polypeptide used |
DBD |
|
3 |
915 |
4878 |
13 |
1 |
|
Ligand sequence |
TCTACA20NCAG |
|
4 |
1 |
1 |
4878 |
1 |
|
Batch of SELEX experiment |
AG |
|
5 |
3 |
0 |
4878 |
0 |
|
Seed sequence |
NCCGGAWATCCGGN |
|
6 |
4878 |
2 |
2 |
2 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2976 |
370 |
1 |
1901 |
|
SELEX cycle |
3 |
|
8 |
4878 |
2 |
503 |
68 |
|
Number of repeats |
dimeric |
|
9 |
6 |
10 |
5 |
4878 |
|
Comment |
|
|
10 |
18 |
4878 |
18 |
2 |
|
Representative matrix |
yes |
|
11 |
25 |
4878 |
11 |
2 |
|
|
|
|
12 |
10 |
57 |
4878 |
884 |
|
Source: |
|
|
13 |
435 |
1194 |
4878 |
1027 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
1152 |
977 |
396 |
2353 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
ERG_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ERG |
|
1 |
2455 |
136 |
435 |
376 |
|
TF group |
ETS |
|
2 |
248 |
2455 |
208 |
21 |
|
Polypeptide used |
full |
|
3 |
250 |
2455 |
0 |
0 |
|
Ligand sequence |
TGCAAG20NAAC |
|
4 |
0 |
0 |
2455 |
5 |
|
Batch of SELEX experiment |
AG |
|
5 |
0 |
0 |
2455 |
13 |
|
Seed sequence |
ACCGGAARTN |
|
6 |
2455 |
3 |
4 |
12 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
2455 |
18 |
0 |
456 |
|
SELEX cycle |
2 |
|
8 |
928 |
35 |
1527 |
8 |
|
Number of repeats |
monomeric |
|
9 |
73 |
941 |
159 |
2455 |
|
Comment |
|
|
10 |
592 |
486 |
987 |
390 |
|
Representative matrix |
no |
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
ERG_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ERG |
|
1 |
1090 |
127 |
240 |
189 |
|
TF group |
ETS |
|
2 |
204 |
1090 |
107 |
17 |
|
Polypeptide used |
full |
|
3 |
148 |
1090 |
3 |
0 |
|
Ligand sequence |
TGCAAG20NAAC |
|
4 |
0 |
0 |
1090 |
0 |
|
Batch of SELEX experiment |
AG |
|
5 |
0 |
1 |
1090 |
0 |
|
Seed sequence |
ACCGGAWATCCGGT |
|
6 |
1090 |
0 |
1 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
719 |
42 |
0 |
372 |
|
SELEX cycle |
3 |
|
8 |
1090 |
0 |
106 |
4 |
|
Number of repeats |
dimeric |
|
9 |
0 |
2 |
0 |
1090 |
|
Comment |
|
|
10 |
5 |
1090 |
5 |
2 |
|
Representative
matrix |
no |
|
11 |
1 |
1090 |
1 |
1 |
|
|
|
|
12 |
1 |
5 |
1090 |
108 |
|
Source: |
|
|
13 |
63 |
131 |
1090 |
188 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
377 |
376 |
126 |
1090 |
|
|
|