EGR1_1

 

 

 

 

A

C

G

T

 

Name

EGR1

1

478

462

295

681

 

TF group

C2H2

2

850

654

60

90

 

Polypeptide used

DBD

3

5

1504

12

30

 

Ligand sequence

TCTCTT20NGA

4

275

14

2233

92

 

Batch of SELEX experiment

Y

5

0

1521

12

19

 

Seed sequence

NMCGCCCMCGCANN

6

4

1525

0

7

 

Hamming distance of sequences to seed

2

7

0

1487

15

100

 

SELEX cycle

2

8

1039

547

0

6

 

Number of repeats

monomeric

9

5

1530

0

2

 

Comment

 

10

52

31

2542

103

 

Representative matrix

yes

11

16

1501

19

64

 

 

 

12

1340

136

280

212

 

Source:

 

13

521

464

234

648

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

515

367

269

775

 

 

 

 

 

 

 

 

 

 

 

 

EGR1_2

 

 

 

 

A

C

G

T

 

Name

EGR1

1

461

391

193

648

 

TF group

C2H2

2

1166

394

3

18

 

Polypeptide used

full

3

11

1616

3

6

 

Ligand sequence

TACTAT20NATC

4

39

0

2087

0

 

Batch of SELEX experiment

AA

5

0

1630

0

0

 

Seed sequence

NACGCCCACGCANN

6

0

1645

0

13

 

Hamming distance of sequences to seed

2

7

0

1642

0

34

 

SELEX cycle

4

8

1221

307

7

0

 

Number of repeats

monomeric

9

0

1650

0

1

 

Comment

 

10

0

0

2156

2

 

Representative matrix

no

11

0

1654

0

13

 

 

 

12

1308

20

160

30

 

Source:

 

13

482

458

104

596

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

510

211

181

778

 

 

 

 

 

 

 

 

 

 

 

 

Egr1_3

 

 

 

 

A

C

G

T

 

Name

Egr1

1

613

615

215

454

 

TF group

C2H2

2

612

586

70

628

 

Polypeptide used

mouse DBD_mutant_DBD

3

1190

706

7

22

 

Ligand sequence

TGCGCC20NCG

4

0

1896

1

5

 

Batch of SELEX experiment

P

5

157

9

1896

19

 

Seed sequence

NNMCGCCCMCTCANNN

6

0

1896

1

0

 

Hamming distance of sequences to seed

1

7

3

1896

2

0

 

SELEX cycle

4

8

0

1896

0

0

 

Number of repeats

monomeric

9

982

914

3

0

 

Comment

Difference to Human potentially due to E410D mutation/polymorphism

10

6

1896

0

3

 

Representative matrix

no

11

14

554

847

1896

 

 

 

12

3

1896

0

0

 

 

 

13

1896

122

77

31

 

 

 

14

839

612

94

351

 

Source:

 

15

591

375

81

849

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

497

588

183

628