CUX1_d1

 

 

 

 

A

C

G

T

 

Name

CUX1

1

18540

217

645

948

 

TF group

CUT

2

327

549

252

18540

 

Polypeptide used

DBD

3

448

18540

307

1083

 

Ligand sequence

TAGCAG40NACT

4

5977

268

12562

219

 

Batch of SELEX experiment

AI

5

18540

196

221

332

 

Seed sequence

ATCRATNNNNNATCRAT

6

1598

565

195

18540

 

Hamming distance of sequences to seed

1

7

7788

4732

2182

3837

 

SELEX cycle

3

8

7150

5224

3370

2796

 

Number of repeats

dimeric

9

4224

6088

4885

3344

 

Comment

 

10

3402

3307

3606

8224

 

Representative matrix

yes

11

6466

1417

6842

3814

 

 

 

12

18540

217

639

793

 

 

 

13

245

338

184

18540

 

 

 

14

353

18540

235

371

 

 

 

15

7775

308

10764

196

 

Source:

 

16

18540

198

246

478

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

1425

414

165

18540

 

 

 

 

 

 

 

 

 

 

 

 

CUX1_d2

 

 

 

 

A

C

G

T

 

Name

CUX1

1

15138

139

384

888

 

TF group

CUT

2

262

380

170

15138

 

Polypeptide used

DBD

3

395

15138

271

1086

 

Ligand sequence

TAGCAG40NACT

4

4465

172

10673

115

 

Batch of SELEX experiment

AI

5

15138

125

190

283

 

Seed sequence

ATCRATNNNNNNATCRAT

6

1235

487

159

15138

 

Hamming distance of sequences to seed

1

7

5584

4483

1547

3525

 

SELEX cycle

3

8

6339

3897

2393

2510

 

Number of repeats

dimeric

9

3781

4679

4113

2566

 

Comment

 

10

3599

4805

3851

2884

 

Representative matrix

yes

11

3168

2399

2939

6633

 

 

 

12

5521

1022

5784

2812

 

 

 

13

15138

156

461

612

 

 

 

14

209

345

182

15138

 

 

 

15

237

15138

184

492

 

 

 

16

6338

242

8801

184

 

Source:

 

17

15138

188

251

423

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

1203

307

150

15138

 

 

 

 

 

 

 

 

 

 

 

 

CUX1_m1

 

 

 

 

A

C

G

T

 

Name

CUX1

1

4099

4649

2401

25659

 

TF group

CUT

2

25659

3296

15550

7605

 

Polypeptide used

DBD

3

25659

109

192

167

 

Ligand sequence

TAGCAG40NACT

4

71

294

77

25659

 

Batch of SELEX experiment

AI

5

51

25659

53

595

 

Seed sequence

TAATCRATAN

6

9580

264

16079

130

 

Hamming distance of sequences to seed

1

7

25659

45

85

231

 

SELEX cycle

3

8

150

95

29

25659

 

Number of repeats

monomeric

9

25659

9420

7560

7079

 

Comment

 

10

8168

7633

3958

5900

 

Representative matrix

yes

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764