|
|
CTCF |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
CTCF |
|
1 |
5423 |
546 |
1733 |
4208 |
|
TF group |
C2H2 |
|
2 |
2600 |
371 |
11366 |
632 |
|
Polypeptide used |
full |
|
3 |
0 |
8052 |
0 |
505 |
|
Ligand sequence |
TAGCGA20NGCT |
|
4 |
64 |
0 |
12480 |
86 |
|
Batch of SELEX experiment |
AJ |
|
5 |
641 |
9591 |
8 |
46 |
|
Seed sequence |
NGCGCCMYCTAGYGGTN |
|
6 |
46 |
10107 |
0 |
0 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
5823 |
5201 |
207 |
241 |
|
SELEX cycle |
4 |
|
8 |
87 |
7091 |
0 |
3888 |
|
Number of repeats |
monomeric |
|
9 |
0 |
8872 |
1 |
0 |
|
Comment |
|
|
10 |
37 |
49 |
23 |
14151 |
|
Representative
matrix |
yes |
|
11 |
10566 |
290 |
1625 |
1355 |
|
|
|
|
12 |
90 |
1616 |
9828 |
764 |
|
|
|
|
13 |
183 |
5157 |
0 |
7952 |
|
|
|
|
14 |
2 |
0 |
8472 |
121 |
|
|
|
|
15 |
406 |
114 |
7463 |
2221 |
|
Source: |
|
|
16 |
2660 |
4936 |
143 |
9766 |
|
||
|
17 |
4213 |
3590 |
2456 |
1302 |
|
|
|